FastQCFastQC Report
Tue 10 May 2022
EGAF00003670147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29374
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG770.262136583373051No Hit
GTACATGGGAAGGCGGGTGATAAGAAACGCAAGAGTCCTGCAGCCAAGAA590.20085790154558453No Hit
CCATATAGCTACGGGAACCTAGTCCATATCGCTTTCACTCTCGCTCTCAC580.19745353033294752No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT560.19064478790767345No Hit
GTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCGCCGTGACGGCCAG510.17362293184448832No Hit
GTATCAACGCAGAGTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCG500.17021856063185128No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG470.1600054469939402No Hit
ATCTTTAACAGTCCTCCTCTCTTTTTTGAATCAAGGGTTCCAGTTAAGCT470.1600054469939402No Hit
GTACATGGGAGCGCGGCTCAGCCATGAGCAACAGGAGTAGCTTTTCCCGG450.15319670456866616No Hit
GTACAAGCTGTACAAGTATGTCGTTCGTCCTAAGAAGAAGAGCGCCTCTT440.14979233335602912No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT390.132770477292844No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC380.129366106080207No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT380.129366106080207No Hit
GTACAAGTATGTCGTTCGTCCTAAGAAGAAGAGCGCCTCTTCCGCTGAGA380.129366106080207No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT370.12596173486756995No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA360.12255736365493293No Hit
GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTT340.11574862122965889No Hit
GTACATGGGTCATCTTCTTCTACGTGCTGGCCAAGGGCTTCGAGATGGCC330.11234425001702185No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT300.10213113637911077No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA300.10213113637911077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)