FastQCFastQC Report
Tue 10 May 2022
EGAF00003670148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29374
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGGCGGGTGATAAGAAACGCAAGAGTCCTGCAGCCAAGAA800.27234969701096207No Hit
CCATATAGCTACGGGAACCTAGTCCATATCGCTTTCACTCTCGCTCTCAC700.23830598488459184No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG690.23490161367195478No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT680.23149724245931777No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT660.2246885000340437No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA470.1600054469939402No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG430.14638796214339211No Hit
GTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCGCCGTGACGGCCAG400.13617484850548103No Hit
ATCTTTAACAGTCCTCCTCTCTTTTTTGAATCAAGGGTTCCAGTTAAGCT380.129366106080207No Hit
GTACATGGGAGCGCGGCTCAGCCATGAGCAACAGGAGTAGCTTTTCCCGG370.12596173486756995No Hit
GTATCAACGCAGAGTACATGGGAAGGCGGGTGATAAGAAACGCAAGAGTC360.12255736365493293No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA360.12255736365493293No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT350.11915299244229592No Hit
TACTTGTACAGCTTGTACAGCGTCTGGGGCGACAGCTCATCAATATCAAG340.11574862122965889No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT340.11574862122965889No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT320.10893987880438484No Hit
CATTAAAACTGAAGGGGAAAAAAAAACCAAAAACCAGTTTGTTACTTCAC320.10893987880438484No Hit
GTACAAGTATGTCGTTCGTCCTAAGAAGAAGAGCGCCTCTTCCGCTGAGA320.10893987880438484No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT300.10213113637911077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)