FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36
Sequences flagged as poor quality0
Sequence length100
%GC66

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTGCAGGAGATGACGAGGCTGTCGCCCTCCACCTGCACCTCGCCGG25.555555555555555No Hit
GTTATGAACAGTATCTAGCCGGTGGGCCTGGTCATCTACACGCTCCCTCG25.555555555555555No Hit
GGCCGGAGCGGGCCTTCGCGCGCCTCCTGGCCATGCTCGCCGCGCCCGGC25.555555555555555No Hit
CGGCGGCGTTGACCACCTCGGCGAGGTGCACGCTGCGGCGACCGGTGTCG25.555555555555555No Hit
CCCCCTGATCCCGCAGGACGCGAGCATCGAATACCTTCGTGACGTGGGAG25.555555555555555No Hit
TTCCACGCCAATATCGAGGAGGCCGATCCGATCGGCGCGCTGATGCGGAA12.7777777777777777No Hit
GGGCGCTTCATCCCGCTCGCAGACGCCCGGATCAGGTGCAGGAACGCGTT12.7777777777777777No Hit
GCGCAGAGAGGAACACCAGGTAGAAGCCGACCATGTGGACCCCGAAGATG12.7777777777777777No Hit
TCACCAACCTGGCCGAGAACGCGGCCCGGCACAGCGGCGACGAGCCGGTC12.7777777777777777No Hit
GCGCAGAGAGGAACACCAGGTAGAAGCCGACCATGTGGACCCCGAAGCTG12.7777777777777777No Hit
TTTCGAGGGTTTTTCATTATCGAATAACACGGTAAGAGTATAGTTCTGCA12.7777777777777777No Hit
GTCCGGGATCGAGCTGAAAACCGCCTGAGTACTGTGTGGCAGGGCCATCC12.7777777777777777No Hit
TTCATCGCCTCGCTACTTGGTCCTTTCTTACAATGGGCAACAGTGGGGTC12.7777777777777777No Hit
GTCCTCAACGTCAAGGTCGGGCTTCCCGACCGACAGAATCGGCATGAGGT12.7777777777777777No Hit
GCCGAACGTCAAGCAGAGCAGGTACGCGAAAGAGCGGCGCAAGGTTCTGC12.7777777777777777No Hit
GCACTGTCCCACGCTCGAAAAGTACACGTCCAGAAGGTCCCGGTACTCCC12.7777777777777777No Hit
GGACAGGGATGTACGGACAGGCAACGATCGAGGGTGCTGGCGCTTCCCGT12.7777777777777777No Hit
CACGAATCCTGCGGCTTGTGCATAGATGAAAAAGTCATACCACTCGATAG12.7777777777777777No Hit
GTGCCAGGTGTGGCCATAGGACACCCCGGCGCCCTTGGTGACCTCGCGGA12.7777777777777777No Hit
GTCCTGCAGCGACCGGATGACGAGCACCCGGTCGATCGTGAAGCGGCAGT12.7777777777777777No Hit
CGCCGCCGCCGCGCCGGGTTTCGATCAGGCCTGCGCGCGCCAGATGCTGG12.7777777777777777No Hit
GTGACCGGGCGCCCCCGATCGGCCGCGGCGGCCGCGAACCGGGCCAGCGG12.7777777777777777No Hit
CCTGCACCACCGCTGGCACCGACCGCGCCGCCGGCTGCGGCGTCGATGTC12.7777777777777777No Hit
GTAGTATCCACACCAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGG12.7777777777777777No Hit
CGGCTACCTCGCGGCCTCGTCCGCGCTGGTCGACGCCCTGCGAGTCGTGC12.7777777777777777No Hit
GTAGTGCGGGACAGCCGCCCAGACGCTCAGCGTGTGCACCCCGGCCTCGG12.7777777777777777No Hit
ACCCTCGGCCGCCGCATCCGCCGCTGGCGCCGCCGCGGCGAGGCTCAGGC12.7777777777777777No Hit
CTTGGTCCACATCTCGACCGATTACGTCTTCGACGGCAGCGGCGACCGCC12.7777777777777777No Hit
GTCCTGGCTGGACGACGCGACACGACGCCGCCTGCCGAGATCCGGCCGCC12.7777777777777777No Hit
ATCCTGCCCGTGTACGGGACCGGGGAATGGTCGGGGCTGCTGTACGCCGC12.7777777777777777No Hit
TACATGTTTGTGGCGCGTTGGCAAACAGAACGTTGACACGAATCAACCAA12.7777777777777777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)