FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36
Sequences flagged as poor quality0
Sequence length100
%GC68

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTAGGACTCTTGTGGCCGATGTATTGGAGCTTGCCTTGAAAATCCGTC25.555555555555555No Hit
CGCGGCCGGCGAGGAGCGCGGCGACCGGCGGCGCCGAAGCAGCGTCGGGC25.555555555555555No Hit
GAGCTGTTCGCCGCGCAGGACGAGGCCTACCGCACCGAGGTCCTGGGCGC25.555555555555555No Hit
ACGTAGATGAACGCCTGGTAGCCCGAGGCCGCCGTTAGGCCGGTCAGGAC25.555555555555555No Hit
GCGGTGTTCCGCGGCGATACCCGCGACCTGCTCGGTCCCGGCGCGGACAT25.555555555555555No Hit
GGCGGGGGCGCCTGCCTAACGCGCCCCCGTCGCGTCGAGCGTGCGCCCCG12.7777777777777777No Hit
GCCAAGGCCCGCGGGCTGGGCTTCGCCGGGTTCGTCTCCACCGGTTCCGA12.7777777777777777No Hit
CCATTCCGCCGGATACGAACCACTGGTTCAAAGCGGGCAAAGAGGGGGCA12.7777777777777777No Hit
GACCTGGTCCGGCTGGGGATCGCGATGTACGGCATCGACCCCGGTGGAGA12.7777777777777777No Hit
CCGACTCCCCGTCCTTCAAGCTTAAGCCGAACGCCACCGTTACTAACCAG12.7777777777777777No Hit
GGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCT12.7777777777777777No Hit
GCGCCCTCTCACGCCCCAGCCGAAGCATCGTCTTCACGAAATTCGCGCCA12.7777777777777777No Hit
TGGCAGGGCCTTCAAGAACGTATCCGGCCGGGATGATTGCCGGGTCGATG12.7777777777777777No Hit
CCCCAAGGCCGGCTGCAAGGTCGACGTGGTCGCGCCCGCGTGCGACGGCC12.7777777777777777No Hit
GCAATCCACATGGCCCGTCGTCCGGTGGCGGACATGCCCCCGAGCGCCAC12.7777777777777777No Hit
GTGTGTCGGCATGACGCTGATGGGCCTGACCTTCGGGCCGATGTCGGCCT12.7777777777777777No Hit
GGGATGCGAAGAGCGGTGTGACGTAGTTCTGCACTCGGGTTTGTATCGAG12.7777777777777777No Hit
GTGTGTCGGCATGACGCTGATGGGCCTGACCTTCGGGACGATGTCGGCCT12.7777777777777777No Hit
GGCCAAGATCATCCAGCATCTGGCGCGCGCAGGCCTGATCGAAACCCGGC12.7777777777777777No Hit
ATCCGTGGAGGAATAATGAGCCAGCAGGCATACCTCAGCAAAGAGGGCCA12.7777777777777777No Hit
CGCGCAGCCACTCCACCAGGTCGTCGCGCTCGCCGCGCAGCTGCTGCACC12.7777777777777777No Hit
AGCCGTCTCCGTGGGCTTGCTTGCGCTGGCCTCGCTGGCGCGGGATGCAT12.7777777777777777No Hit
CGGCCGGCCGGCACTTCCGGGCGGGAAGAACCGTCGCCCCGGGCCGGGTT12.7777777777777777No Hit
GAGGTGGAGTGTTGGAAACGCGCGTGCGGTGCATCACAGGTGAACCTGCA12.7777777777777777No Hit
GTCGGGCAGGCCACGGCCGAAGGCCTCGATGGTCAGCCAGTCGTCATAGC12.7777777777777777No Hit
GGCGGATGGCGGCGGCAGCACCGGCAGCGGTTCGTGCAGAAGCTCAACGC12.7777777777777777No Hit
GACCGGGGCCGCGGTCGCGGACCTCGGCTGTCAGGGTGGCGCCGTCGTGC12.7777777777777777No Hit
CCTCGACGTCGGGAGGGTGGTCAGCGTGGGCGCCCTCCTCGCGGACGTGC12.7777777777777777No Hit
CAGCAGGATCGCCCCGAGGAAAGCCGTGCGCGGGACGGCGTAGAGTGCCG12.7777777777777777No Hit
GTGCTACTTGCGGCGAACTTCGTTCACTGCTGGCGTGCCCGTACTGGAAG12.7777777777777777No Hit
GGACAGCAGGATGTTGCCGGGCCGGACGTCGCGGTGGATCACCCCGGCCT12.7777777777777777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)