FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51
Sequences flagged as poor quality0
Sequence length100
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTGTGACTCAATGGTTTATACGACTATTCCCGCTCTCTTCTGCGCGT35.88235294117647No Hit
ACCCGCGTGTGCGGGGCGCGCGAGGCCGACGGGTACCGCCGGTTCGTCGA35.88235294117647No Hit
CGTGCGCACCGTTCCCCCGGGCGCGGGAGCGTCGCGCAGGGCGAGCACCT35.88235294117647No Hit
GCGCAGAGAGGAACACCAGGTAGAAGCCGACCATGTGGACCCCGAAGCTG23.9215686274509802No Hit
GCCGTTGCAGGAGATGACGAGGCTGTCGCCCTCCACCTGCACCTCGCCGG23.9215686274509802No Hit
GTCGACTACCGTTACACGCGCCGCTTCGAAGCGCAGCGCGGCGAACATGG23.9215686274509802No Hit
ATCTTATCCTGTGCTACGCGCTTCGCTTGTCTTGCGCAAAATTAAAAAGG23.9215686274509802No Hit
GTGAAGAAGCGGCAGTTCTTCTCCAGCGGCGTGCGGACCGCGCAAACCGG23.9215686274509802No Hit
CAGCTACCACGACGCGACCGGCGCCGCCGTCGCCGCGCCGGTGCGGGCCC23.9215686274509802No Hit
ACGTAGAAGGTGGGGTTAGGACCGCCAGAGTGCAGGCCACCACGGTGGAA11.9607843137254901No Hit
CCCGACACCCTCCGCTCCGGTGACCTGCAGATCTGGGATACGTTGCAGAC11.9607843137254901No Hit
CGCCGAAGTCGAACGCCAGCTTCCACTGCCCATCGGCGTCCGGGCCCACG11.9607843137254901No Hit
GTGCTGGAGAAGTCTCTGTCTCCTCGACCCCAAACGGTACGCTTCTGAAA11.9607843137254901No Hit
GCCCACGACGACGACCACCGATGGCTGCAGGCGCGTGAAGCCGTCGCTGG11.9607843137254901No Hit
GCGATGGCGTCGGGCCTCGCTTCGCTTGAGCTGGCCACGGAGGACATCTA11.9607843137254901No Hit
GTTCCGTGACGTCGGGCTCGAACCACCCACCGAGCTCCAAGCCGAGTTCG11.9607843137254901No Hit
GGCTGAGCGTGACCGTCGCGCCGCTGAGCGTGCCGAGGCTGCTGAGGCTG11.9607843137254901No Hit
GCCGAACGTCAAGCAGAGCAGGTACGCGAAAGAGCGGCGCAAGGTTCTGC11.9607843137254901No Hit
GCTCAGAGAGGTTCCGTGCCTCCTCCTCAGTGAAGTTGCCGGTGATCTGC11.9607843137254901No Hit
ACCTCAAAGGCTTCATGGCGGGCGTCGAGGCCCGCCGCGGCAGCCTCGCG11.9607843137254901No Hit
GTGTTCGTCACCTGTAGCTCACCTTGACGATGCTGGGATCTCCCTCCACC11.9607843137254901No Hit
CGACCGAGCCTTCTTCCAGCACCACGCCCTTCAGCTTGCGGCCATAGTCC11.9607843137254901No Hit
CAGGGAGTCCAGCCCCTGAAGAACAGTGTTTACGACGCGCTTCAGCTCGC11.9607843137254901No Hit
TTCGTGTTCGATTACGTAGCTAACAGGTTGAGAGGCGTCGGGGTCGTTTG11.9607843137254901No Hit
GGATTGCGCCACCACTGGCGAGTTCGGCCCGAAGCGCTCCCGACTATGCG11.9607843137254901No Hit
GTCATGCACGAAGGCTTCGTGAACTTCAACGCCGGGACGCTCGGTTCTGC11.9607843137254901No Hit
GGATGGCACCAGGCGACAGCACCTGCCGAGGCCATCCCGGCCAGAACCAG11.9607843137254901No Hit
TCACCGAAGGGGAATGGCTGAAAAGCCTCAACCGCTATCCGTTTGAGGTG11.9607843137254901No Hit
CCCTCTGGCTCAAGGAGCTGCTCCAGGTCTACGTCGACCACCTGTCTCTT11.9607843137254901No Hit
GCCGTTGCGGGAGATGACGAGGCTGTCGCCCTCCACCTGCACCTCGCCGG11.9607843137254901No Hit
GACCTACACGACGCCGGAACAAGCCACCGCCGCTCGCCTGCGCGTCGTCG11.9607843137254901No Hit
ATGCGTCAGAGGGTGACGTCGCCCCGCGGGGTGCGGAAGGTCACCGAGAC11.9607843137254901No Hit
CCTGCTGGCCCTGGCCTCGCCGCTGCTGTGAGGACCGCCATGGACCCCGA11.9607843137254901No Hit
TGTCCGCGGAGGCGCTCGCCGGCGACCTGCCCGTCGCGCTGCGCGCCCTC11.9607843137254901No Hit
GTCGACCTCGACACCCCGGCACCTGATGCTTTCACCGCCCAGGTGCTGCG11.9607843137254901No Hit
ATTGGGATCAATGACCACTAAAGAACGAACCGTTAGAGTTTCACTGGCAT11.9607843137254901No Hit
GGTTGCCGAGCGGGGTGCGGACGGAGCCGTTCTCCGCCTGGCCCTCTACA11.9607843137254901No Hit
ATCTGCGACGTTTTCACCGAGCTGGAGGACCTGTGGCACGTTGAGATCGA11.9607843137254901No Hit
GCTTTCTTGCTCCCGCGTAAGCACGACGGTAGTGGGGCCGGCAGTAACGA11.9607843137254901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)