FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51
Sequences flagged as poor quality0
Sequence length100
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTGGGCGCTCCCGGACGCGCTCGACTCGCTGCGGCTGCTGAACGAGGC35.88235294117647No Hit
GAGCTGTTCGCCGCGCAGGACGAGGCCTACCGCACCGAGGTCCTGGGCGC35.88235294117647No Hit
GCCCTGCAGGGTCCGGAAGGCGCCGAGCCGGGCCAGCCGCAGCAGGTTGG35.88235294117647No Hit
GGTTGCCGAAGCCGCCGTCCCCGCCTTTGGCGAGCATGACCTTCTGGCCC23.9215686274509802No Hit
GTGATGATGTTGTGATTATCCCTTCACTGAAAGATGAGGAAGAAATCAAG23.9215686274509802No Hit
GAAATCGTCGAAGGTTCGGACATCATCTCGCAACTGGTTCGGGATTACAG23.9215686274509802No Hit
GTGTGTCGGCATGACGCTGATGGGCCTGACCTTCGGGCCGATGTCGGCCT23.9215686274509802No Hit
CGACAGGGCTAGACTAGCTGCCGGCTTCCCCGATCACCACCATGCATCTC23.9215686274509802No Hit
GTGTCGCCCAGCGCCCGGGCGACCCGGCACGTCGTGGCGGCCTCGGCCCG23.9215686274509802No Hit
GCTTTTGACTTTACTGATGCCGGCGCGTCGAGTGACAGCGTGTATGCTAA11.9607843137254901No Hit
TCTGACATGAGCCCCACAATGTCCAGGTCAACGTGAGAGAGCTGCTTGTT11.9607843137254901No Hit
GTCCAGCCGCCGCCGCACTCCTCGGCGATGGCGGCGATGCCGCGGAACTG11.9607843137254901No Hit
ATCCACCGCCCGCGCCCGTCTGGAACAGGTGGATGACGCCTATCTGCGCG11.9607843137254901No Hit
GTGGTCGACGTAGACCTGGAGCAGCTCCTTGAGCCAGAGGGCTGTCTCTT11.9607843137254901No Hit
CAAGAATATCAGGGGCATCTTCGATTTCGTTCCCGCACGGAACGCGGTAC11.9607843137254901No Hit
GTCAGGGCGTCGTGAAGCAACTGCTCCAGCGTGTCGGCGTTGCGGTTAAG11.9607843137254901No Hit
GGAGGAGTTCGCGGACTCCTCGACTCGCCTGAACGCCCTGGAGGGTGAGC11.9607843137254901No Hit
ACGCTCAGAGGTCAATGTCAGGATCCATATTGTCGGCCGGACCCTTCTTC11.9607843137254901No Hit
GATCGGCGAAGGGTACGCGGATGCCGGGTTCGTGACAAACCCTCCATTCC11.9607843137254901No Hit
CCGGAGGAGCTCTCCGGCGGCCAGCAGCAGCGGGTCGCGCTCGCCCGCGC11.9607843137254901No Hit
GTTTACGTCTAGGCGATACCGCACCGAATTTTGAACAGCAATCCAGTGAA11.9607843137254901No Hit
AAAATAGTCGAAGTTTCGGACATCATCTCGCAACTGGTTCGGGATTACAG11.9607843137254901No Hit
TGTTCGATCACGTCGCGCCCAATGGTGTCTCTGGTCTGCCCTTTGGCCAA11.9607843137254901No Hit
GTTCTCGGGCGGGGCGATGGCCTGCGGGCTGATCTGGCCCCTCAGCAGGT11.9607843137254901No Hit
GGTTAAACGAGGCGCTCGGCAGGCTTTGCACCTCAAACGGATAGCGGTTG11.9607843137254901No Hit
CAGCAGGCTGCCCGAGCCGATGGAAATGCGGTGCGTGCCGCCGCCGGAGA11.9607843137254901No Hit
CTGCCTCCTGGGGAAGGGGCGGCGTAGTCCCGCCGAAGAGGGGGCACTGC11.9607843137254901No Hit
GATCACGTCCATGGCGAGAGCCAAGCCCCGATCTTGGAAAACACCGGGGC11.9607843137254901No Hit
GCCCGCAGTGCGGCGGCGTCGTGAAGGAGACCTACCGCCGCTACGCCTGC11.9607843137254901No Hit
GCCCGCCCCAAGGTGCTGGTCTACGATGCCGAGGTCACTTCTCGAGTGCT11.9607843137254901No Hit
CAAGGGGCGTCTCCCCGCGTCCGATCACGGAAGCACGCGGTGGCCCGCGA11.9607843137254901No Hit
CACGCCGGACCGCTCGGCGGTCGCGATGTTGCGGCGGGTCTGGGAGCGGA11.9607843137254901No Hit
GGACATGCACCCCTCGCAGGCCGCCGAGCCCCAGGCCTCCATCGAGCGCC11.9607843137254901No Hit
GGTGATCACCCTCTCGGACTCCGATGGAATTTTTCTGATGATCCTACGAT11.9607843137254901No Hit
TCTCTGCACCGAAGCCGCCGAAGGTGGGGGCCTCGTGGGCAACCACCAGG11.9607843137254901No Hit
GACGTGGGCCGCGCAGCCGTCCACGCCGGCCTCGGCCAACGCGATGATGT11.9607843137254901No Hit
GCATGTGCTCGACCACCTTGACGGTGACCGATCCAAATACGCCGAGCCAC11.9607843137254901No Hit
ATGCGAGAGAGTGGGTTGCGTTAGGGAATGATGCCTGGGATTTCGAGAGT11.9607843137254901No Hit
GTGCTACTTGCGGCGAACTTCGTTCACTGCTGGCGTGCCCGTACTGGAAG11.9607843137254901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)