FastQCFastQC Report
Fri 10 May 2024
EGAF00003670252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Total Bases1.8 kbp
Sequences flagged as poor quality0
Sequence length100
%GC64

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTTGATCGCTCTGCCACTTGCCCTGAGCGTCCAAAAGTGTTCCTGGC211.11111111111111No Hit
CCCCAGGTGCGAGCAGATGCCCACGGCGACCAGGATCTCTTTGTGGTCCT211.11111111111111No Hit
GTCAGGCGCAGATCGTCGAGCGGCCACGGCCCGGGGCACACACCCCGGTC15.555555555555555No Hit
GCTCTACGGCGCGACCAAGGGGGCCGTAGTCAACCTCGCACGCAGACTGG15.555555555555555No Hit
GGGTGGGCTGACGAGATGTAGCGACCGTGGACGCGTGCTCGCCTGACTCC15.555555555555555No Hit
GGCCCGCGAGCTGTTCACCGCCGAGGGCGAGCGCGCGTGGGCGCCCGGCT15.555555555555555No Hit
GCGCGAGGAAGTGCCCGCTCGGCGTCAGACGACGTTCGAAACCTGCAGGA15.555555555555555No Hit
TCCCTGGCATCCGCACGTCCATCACGACGACGTCGGGAACCTGCTCACGC15.555555555555555No Hit
GGGGTGCTCGACTTGGCGGGCGCGCATTGGTGATTCTGGATGACTTGGAT15.555555555555555No Hit
CCAATTCGGCGCGGATGGCGGCCGCAGCTGTGGCGTCGCCCCGCGCGCGC15.555555555555555No Hit
GACCGCGTAGCGCTAGGTAAAGCCTTCGCGAACTTGTCGGGTACCCTGTT15.555555555555555No Hit
TCATCCAAGAGGGGGACATCGATGTGAGTAACTGAACGCTTCGTGAGATT15.555555555555555No Hit
CCCACCACCAGCCGAGCGCGATCAGCGCGGCGGCGGTCACCCCGACGATC15.555555555555555No Hit
GCTCAGGGGTGCTGCTACCGACGAGGAGCGCGACCAGCTGCTGTCTCTTA15.555555555555555No Hit
CATCATGGGCTGTTGGGCCCGGAGAACCCATTCGGTGCCGTCGGCCACCG15.555555555555555No Hit
CTCCTATTCATCTATCCCACAAAACGGGGTGGTTCCACATTCAAATCCCA15.555555555555555No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)