FastQCFastQC Report
Tue 10 May 2022
EGAF00003670441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31446
Sequences flagged as poor quality0
Sequence length100
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTATAGAGCTCACACCCATACTCCCAGCTGGGACCCAGCCTTCCCTG590.18762322711950644No Hit
GTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCCTGTGG490.1558226801500986No Hit
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG410.1303822425745723No Hit
CCCTCACCCTGGTCACACTGGCTCTCTGCTGCAGCTCCGCTTCTGCAGAG410.1303822425745723No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG360.11448196908986834No Hit
GAGCAAGGCTGGTGGGCGTGGACTCAAAGCATGGCAGCGGCAGAGGCTGG350.11130191439292757No Hit
CTTCTGGAGAGAGCACAGCAGCCACTGCAGCTTTCACCACGTCCTGACTC330.10494180499904598No Hit
GTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGAGCTTTGGGCT320.10176175030210521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)