FastQCFastQC Report
Tue 10 May 2022
EGAF00003670483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37797
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA620.16403418260708522No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG590.15609704473900043No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA570.1508056194936106No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG530.1402227690028309No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC480.1269942058893563No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC470.12434849326666139No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT470.12434849326666139No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT450.11905706802127153No Hit
CTCTAGGCCACGGAATTAACCCGAGCAGGCATGGAGGCCTCTGCTCTCAC440.11641135539857661No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG430.11376564277588168No Hit
GCTTAAGACGGTGAGGTCAGCTTCACATTCTCAGGAACTCTCCTTCTTTG410.10847421753049184No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT390.10318279228510199No Hit
GGTATATTTGGGATAGTTGGCTCCTCGCTGGGTCAGGATGGCTGGGTGCC380.10053707966240708No Hit
GAATTAACCCGAGCAGGCATGGAGGCCTCTGCTCTCACCTCATCAGCAGT380.10053707966240708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)