FastQCFastQC Report
Tue 10 May 2022
EGAF00003670484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37797
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG700.18519988358864461No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG600.15874275736169538No Hit
GAATTAACCCGAGCAGGCATGGAGGCCTCTGCTCTCACCTCATCAGCAGT530.1402227690028309No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA520.13757705638013598No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA510.13493134375744106No Hit
GGTATATTTGGGATAGTTGGCTCCTCGCTGGGTCAGGATGGCTGGGTGCC450.11905706802127153No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA450.11905706802127153No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC440.11641135539857661No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT440.11641135539857661No Hit
GTACATGGGAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAG400.10582850490779691No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT390.10318279228510199No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT390.10318279228510199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)