FastQCFastQC Report
Tue 10 May 2022
EGAF00003670485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37692
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG840.22285896211397643No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG700.18571580176164704No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA650.17245038735010082No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA550.1459195585270084No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG510.13530722699777142No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT500.13265414411546217No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC480.1273479783508437No Hit
GCTTAAGACGGTGAGGTCAGCTTCACATTCTCAGGAACTCTCCTTCTTTG450.11938872970391595No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC430.11408256393929746No Hit
CTCTAGGCCACGGAATTAACCCGAGCAGGCATGGAGGCCTCTGCTCTCAC420.11142948105698822No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT410.10877639817467898No Hit
GTATATTTCACCCCAGGTATATTTGGGATAGTTGGCTCCTCGCTGGGTCA390.10347023241006048No Hit
GTATCAACGCAGAGTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCG380.10081714952775125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)