FastQCFastQC Report
Tue 10 May 2022
EGAF00003670499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380884
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT10710.2811879732411968No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG8830.231829113325842No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA7840.20583694773211791No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA6790.17826949937513784No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC6670.17511893384862584No Hit
GATTAAACTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTA5800.15227733378141375No Hit
CAATAATACAGCACATAAAAGAGATTACATTAAGAGAAGAGACAGGAACT5590.14676384411001775No Hit
GTACATGGGAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA5570.1462387498555991No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG5560.14597620272838974No Hit
GGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCT5320.13967507167536572No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT5130.13468667625838837No Hit
GTGTTATCCATGTATTTGCAACAGCAGAGAAACAGTGACAGTGGACCATC4460.117096018735363No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4350.11420800033606032No Hit
CTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGGTATTCCAAACCA4120.10816941641024565No Hit
GTACATTCCACAAGCATTGCCTTCTTATTTTACTTCTTTTAGCTGTTTAA3930.1031810209932683No Hit
GTATCAACGCAGAGTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTC3850.10108064397559363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)