FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGTGCCTGAGCGCATTTGCAAGCTTTAGAATGCCCGTGAGCTACATT510.0No Hit
TCTTGAACGAGGACGTCTCTATGGCAGGTTAGCTTCTCCAGATCGAGCCG36.0No Hit
GGGAATACTGCGCCGACTCGCGGCTTGACGCCGGGGAAATCATCGTCGAG24.0No Hit
CAACACGCGCGTCACTTTCCCTGCTCAATCCAACGTACATTTGATTTTGC24.0No Hit
ACCCAGAGAGACGCCAGCCATGGCCATTCTGACTTCTCGTCGATGCAGGA24.0No Hit
ATCGGATCTCCCGCCGCCTCTCGGCCGGCTGGCTGGCGCCGACTTTCGCG24.0No Hit
ACGCTTGGCCGCGCTGTCGTTCCATCCATGTCAGCTGCACATCGCGGCCC24.0No Hit
GATCGGGCTGACGGCGCGGGAGCAGAGCACGGTTGCCGAGGCGGCTGACA24.0No Hit
CCGATGAGCAGGGCGAACGAGGCGCACACGACCACGCTGAGCCCGATCCG24.0No Hit
AGCCACGGCTAGCGGGAGACGTACCGGCGAGGGTCGTAGCCGACAGGGCG24.0No Hit
GGTGATTGGCGTTCCTGGTACCGGCTGGCCTACGCCTACGACGTCGCCGG24.0No Hit
AACCAGCTTAACGACTATATTTTGCCGCGCTTAGAGACTATTGATGCGCC12.0No Hit
TCCTGAGACCAAAGCTAGTAACCACGGTGCCACCAGTCCTGCCGCCAACG12.0No Hit
GATCGACCGGGTCGACTCGCTGACCGGCGCGGCCGTGACCACCTACGGCG12.0No Hit
GCTGCGGCGCCTGGCCCGGCTGTGATCCCGTCGGCTGCGGGCCGGTTGGC12.0No Hit
ATCGGATCTCCCGCCGCCTATCGGCCGGCTGGCTGGCGCCGACTTTCGCG12.0No Hit
CCCTCAGGTTTGGTGGTCCAACGATCGAGTGCCTCGAGATGATGGATACG12.0No Hit
GCCGCTACCGCGACGCGTGCGTGCCGAGAAGCGCGCTGGCCGTATCCAAC12.0No Hit
AGCCTGGCCGGGTACATCCCGAGCTCGAGCGGCACACCATTCACACGAGC12.0No Hit
CCGTTTCCCTTGCCGTCAATCGTATCGGTGCCCTGGCCTCTGGCTATCTG12.0No Hit
ACAGGTGCTGATGGAAGGGTGCGCCCAGGCCCGGCGCTATTTCGGAGGCG12.0No Hit
CCTGGGCGAACTCGGGCCAGTAGTGCGCGACCGGCGCGTCGAGCTCGAGG12.0No Hit
CCTCGTCTGGTGCCTTCACATCAGGCAATCCACTTGTTGCAAATTGCCCG12.0No Hit
ACCTCGTCGAGCACGAGCCCACCCTGCGCGCCGAGCCGGCCCAGCAGCGT12.0No Hit
GGACACGCTGGTGGGCGGCGTGGGCGTGGACACGCTGATCGGCGGCACGG12.0No Hit
GACCACGTTCGCCACCTGTGCTGTGTAAATCTGGCGAAGCGGTTGTGTCC12.0No Hit
CTGATGAAGGTGTCGCGCACGCTCGACGACATGCTGAACCGCGCGCCGAA12.0No Hit
ATCTCCTCGTCTTCGTCTTGCGAGGCCAGCGGGCTGTTTTCAGCATCCAA12.0No Hit
ACTTGCTGGCGATGTCGGCGTCGGACAGCGCGCCGATGACGGGCTGCGTG12.0No Hit
GTCAATGGGGTCCTTGGTCATCTTGAGATCTCCGGAAGCACACCGACACA12.0No Hit
TTATAGATGTGTGCCTCCATGCCCAGCTAATTTTTCTATTTTTAGTAGAG12.0No Hit
GTCGGGACGTTCGACAAGGCCTTCAAGTCAAGAATCCAGCTCTCGCTGCA12.0No Hit
GGTGAGCCTCACGGCGCTCTCGGGCGTGCCCTTCATCGCCTTCGACCGCG12.0No Hit
GGTCATGCAGAAGGCTGAAGCTATCTCACCGTCCAAGAGAGGCTTGAGCC12.0No Hit
GCTCGACGATCCCTTGCCGTAGACGCCGACGTTGACCGGCCATTCGTCCG12.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)