FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTAGGCCAGCCCCAAATTGACATTTGGATGAGGGATATGCCTATGGCAG510.0No Hit
TAGTTTGGATTCTATCATTCACAGTCCCACATCACCAACCCTGAAACCTT36.0No Hit
AGTTCGAGATGCGAACGCGTTCCTTGATGACACAAGTCCGTGCTGACTGC24.0No Hit
TTAGCCAAGTGGTCACGGCGCCTCCCTGCTATGTGCAGTACAATTTGGTA24.0No Hit
CGCCCGAGGCGATCGCGTCGCGTGGCGCGGCCACGCCACGAGCGACCATC24.0No Hit
CTCCGGTGCCGTGGCTGAGTCGACTGTGCGCCGTCATCCTCGCCATCGAG24.0No Hit
CCGGTACCTTGGGCACATCGGCGCCCGCCGCCATCAACTCACGCACCTTG24.0No Hit
ATGGTCTTACGTGCCCGGGCCCGGTCGCCGGCGACGTCGTAGGCGTAGGC24.0No Hit
CAATGCATGCGAGGAATGGCGCCTCGGGAGTTGGGGAGGGACGTTGCCTC24.0No Hit
GCGAAACCCCGCTCGCTCCGGCAATCACCGTCGGCAAACTTCCCACTGCA24.0No Hit
CACCCCCACCGCAATGAGGAGTGGGGCAGTCCGGGGCTTTCTAATCTTGA12.0No Hit
GGCCGCACACCTGCTGGCCGCCGCGTACGGCGACGCGCCCGAGGGCGAGG12.0No Hit
GAATGTGACGATCAGAGGCATTCACCTCCTGGTACCCATGTGCATGCAAT12.0No Hit
CTCATAGGGTCTCGGCATCGCTCTGGTAGCAGCACAGAAGGCTCAGGTGC12.0No Hit
CGTCGTTACTGGCCACCTGCGAGCGCACCAGGGTAGGCAGCACTCGGTCT12.0No Hit
GCGAAACCCCGCTCGCTCAGGCAATCACCGTCGGCAAACTTCACACTGCA12.0No Hit
GCATCAGCCACCCGGGACAGGCACCGCAGCCGGGGCAGGCACCGGGCCAG12.0No Hit
CGCACGCCCTTGGCGACGCAGTGGCTCGTGGACACGATGGCGTCGTAGTC12.0No Hit
CCTGCTCGTCGACGGGTTCATCGGGTCGCCACGCGGCGGTGGGCACGACA12.0No Hit
GAGGTCGCGCTCGTCCGGCCCCACGCCGGTGTCCAGGGCGAAGCCGACGG12.0No Hit
CCAGGTTCTTCTCGCGCAGCAGCCGGTCCAGCGCCTTGCGCGTGGGGGCC12.0No Hit
CTATTAGCTTGCCTTTGAACTTTGCTAGCTGATGGGTGGTGGTGATCATA12.0No Hit
CATCAGACCTTCCCAACTTCGCAAACAACTGTGCGATGCTGCTGCGCCGC12.0No Hit
CAGCGGTGCCGCGTGCACCGTCATCGTCGGCGGGCGCACCGTTGTCGACC12.0No Hit
GGTCGGCATTCTGGTAGCCGATGCTGATGACCGCATTGCCACGGCCGTCC12.0No Hit
GGTTACCCCGAGCAGTCAGCGGGAACGCAAGGTTCATGGCAAACGCATCA12.0No Hit
CGTCCGCAGCTCGAAGGAGCAGTTCTATGTTTCGGGGGCCGGGTGTGGTG12.0No Hit
TTCCTAATGGGACGCTAACAATTCTAATCTGCCAGTCGACTTGGAGGTTG12.0No Hit
GCGCCCAACGAGCTTGGATGCTGGTGAACTCGCTTCGCCCCAAGATAGTT12.0No Hit
GCAATCGCCTCGTAAACTTTGCGCACGGTCGCGCATTATTATCATGCCGT12.0No Hit
AGTTCCTACCCAGGACATGCTCGTGCGTCCTGCGAACCATCTTGATCTCT12.0No Hit
GATAAGCTGCGGCAGCTGGCTGAGCGGAGGCGGGCAGAGCTTGCATCTGC12.0No Hit
AGCCGCGGGTCGGTCTTGTCGTAAACGATGCCGGCGCGGTCGAGCTCGGC12.0No Hit
ACCCGGCGCAACCGCCGCCTGGTCATCTCCTTCTTCACCACCGTCGGCAA12.0No Hit
GCGGCGGGCTGCGCACCTTCGCCCACAACTGTGCGATGCTGCTGCGCCGC12.0No Hit
GCCGCTGGCGACCGGACGGCGCACTCGTACTTCCTCAGCCGCGCGCAAGA12.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)