FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGAACTCCTGCCTGGTGACCGGGACAACCTGGCCATTCAGACCCGG33.296703296703297No Hit
CCCCAGGAGGGCTTTATTTTTTCTTTTCAACATCCTGTTCTGCGGCTTCC33.296703296703297No Hit
GGCCACTATGCTATCAAGTTTCCGCTGACCACTGAGTGGGCCGGAAGAAG22.197802197802198No Hit
CCACCACGTCGTGGCGGACCCGGACGTCGAGGGCGAAGCGCGACCGGAGG22.197802197802198No Hit
CAGCTAGGCTCCGCGCTTCCGACGCTGGCCGCGACCTTCGTGCTGGCCTG22.197802197802198No Hit
CATGAGAGGACACTGGCTACAGATATTCTAATGGGCCTCATCAAGAATTA22.197802197802198No Hit
GAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGT22.197802197802198No Hit
GTGTTGGGCTGGCCCAGCTCCACAGGCTCCTTGGGAAACACGGTCACCTC22.197802197802198No Hit
GGGGTGGGTTTCGCCGGGCATAAACGTCCTGCGACTACCATTCGCGCTGT22.197802197802198No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG22.197802197802198Clontech Universal Primer Mix Long (96% over 26bp)
TTTTTTATTAGGGCAAGTGCATGTTCTGTAACATATTTCACTTGCAAGCA22.197802197802198No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA22.197802197802198Clontech Universal Primer Mix Long (96% over 26bp)
GTTTATCATTGCAGTTTAGTATTTTCCTGTAGTGATAAAGTTTGATTGTT22.197802197802198No Hit
TTCACCGCCAGCCTGATCGAAAGCCACTTGGGCAGCCTGCGCGAGCGCCT22.197802197802198No Hit
GAAGAATGCCAAGCAGCCCTTTCTCTGTTTAACGGACGATGGTATGCAGG22.197802197802198No Hit
CCTCCGGATTGTGTTAGTAGTAGCCATCAGGAGGGTCTCCAACTAAAACA11.098901098901099No Hit
GGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCT11.098901098901099No Hit
GATGCCAACACAGCAGCCATTCAAGCAATCCTATACAACCTGTCTCTTAT11.098901098901099No Hit
TTCCTGGAGGTCGTCAACGATGCCCTGGGGTCGGTGGCCGTCATCATCAG11.098901098901099No Hit
TCATCAGACTAGTGCTGAGTCTTGGGGTACTGGCAGAGCTGTGGCTCGAA11.098901098901099No Hit
GTTCTGACCCAGTGACCTCATGACAGTTCCAAGTTCCTTTGTTGTGATGG11.098901098901099No Hit
GGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAG11.098901098901099No Hit
CAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
ACGCCGGGAAGGAAGCCCGGTGTGTCGACGACGAAGACGAGCGGGATGTT11.098901098901099No Hit
GTCCAAACCTTCTTCTCTCCTGTCAACAGTGGCCAGCCCCCCAACTATGA11.098901098901099No Hit
GCCACGAACACAGCGAACTCGGCGAGATGGACCTGCGCGTGCGCGCCCTC11.098901098901099No Hit
GAATGGGAACGAATGGAATGGAATGGAAAGGAATGGAATCGAATGGAAAG11.098901098901099No Hit
CCTCAAGCCAGGTGTACTCAAGGATGAGAGAAAGGATGAAGAAAGACACA11.098901098901099No Hit
CTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAGATTCG11.098901098901099No Hit
GTCTGTGCATAGGAAGACCCTGCACCACTGTTGCCTTCACACAGGTTAAC11.098901098901099No Hit
GTCCCTGTACTATTATATCCAGCAAGACACTAAGGGCGACTACCAGAAAG11.098901098901099No Hit
GGGTGGAATGGCTGCAAATAAAGGATAATGATTTCTCCTATCGACCCAAC11.098901098901099No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
TCTTTTCCTCTTCCATCATCAGGAGACCTTAGTCCCAGGCAAAGTCACAA11.098901098901099No Hit
ACCCTTCCCTGCACAAGCACAACTATACTTGAGAAAGGAGAATGATATGT11.098901098901099No Hit
TCACCAGTCACCTCCACTTGGCCTTCATAGATCTTGTCCATGCCAAACCT11.098901098901099No Hit
GTTATATGTAAAATAGGTGAAGGGTGAGAATTAACCAGAGGAAAGCAAGC11.098901098901099No Hit
ATCCCCTACATGGCCGCCCATGAGAGCGATGCCCGCCGACGCATGATCAG11.098901098901099No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
GCCCTTGCCTTGAGTCAGTGCGCCGCTCTCCAGCCCGCTTGAACGCTCCC11.098901098901099No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
GATTAGGCGTAGGTAGAAGTAGAGGTTAAGGAGGGTGATGGTGGCTATGA11.098901098901099No Hit
CCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAG11.098901098901099No Hit
GACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCA11.098901098901099No Hit
CCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGGTGCCCGA11.098901098901099No Hit
TCATAGTAGTAATCTCGGTCCTCCACCACTTCCTCCCCTTCTTCCTCATC11.098901098901099No Hit
CCTCAGCTGCTGCCAGGATCTGGTCTCTTTGGCCCCTCCCAGGCCATCAG11.098901098901099No Hit
CCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGA11.098901098901099No Hit
TTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCG11.098901098901099No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA11.098901098901099Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GACTTCGAGGCTCGCATCGCGCTGTTGCCACTGTTACAGGCAGAAACCGA11.098901098901099No Hit
GTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCT11.098901098901099No Hit
AGCCTGAAGGACCCATGGACACGTGACTCCAGTGTTCTCAACAACATCTT11.098901098901099No Hit
GTACTTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
CTATTAGGTAATTTCTTCCCTGCCCCATTTGTGGAGGTTTGTTTCCTATA11.098901098901099No Hit
CTCCTGCAAATGCAAAGAGTGCAAATGCACCTCCTGCAAGAAAAGCTGCT11.098901098901099No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTG11.098901098901099No Hit
CTCTTCTCCTCGAACTCCTGCAGCAGCTCGTCGATCTCGTTCTCCATGTC11.098901098901099No Hit
ATCTTATAGGCATACAAACTAAATTAATTAGCCATCCCTATAGCTTCAAC11.098901098901099No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC11.098901098901099Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACT11.098901098901099No Hit
GAAGTGGGCTCGGGCGCGGTGCCGGGCACCCATGTCTCGGTAGCACTGGG11.098901098901099No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT11.098901098901099No Hit
GGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGT11.098901098901099No Hit
GAGAGGAACCGCAGGTTCAGACATTTGGTGTATGTGCTTGGCTGAGGAGC11.098901098901099No Hit
GTAGGGACACTTCAGCTTTCCTCCATTAATGAGCTTATTGAGTGCATCTC11.098901098901099No Hit
GTCTTGTTCCACCAGTATTTACCAGGAAAACAAAGAATGTGTTAAGGGAT11.098901098901099No Hit
CTGTTTGGGAAAAGAAAATGGTACAGAAGAATGGAAACCAAGCCACCCCT11.098901098901099No Hit
GCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAA11.098901098901099No Hit
CCATCGCGCGATTCAAGCAGGACAAGCCGGTGCTGTACTACACGTGGACG11.098901098901099No Hit
GTACTTGGGGGGAACTTTCCAGAATGCTCGGAGAGAGGCGGAGGAGAGGT11.098901098901099No Hit
ATCTACTAGTGGCATGTTGGCACTCAGAAAGTTTCAGATTTTGGAGCATT11.098901098901099No Hit
CTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCT11.098901098901099No Hit
GCTCCTTAGTCCCTACAATAGCAGTGTTGCACAGTTGCTACAAAGACCAT11.098901098901099No Hit

[OK]Adapter Content

Adapter graph