FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCTATAAGAAGGAGAAAGCTCGAGTCATCACTGAGGAAGAGAAGAATT33.296703296703297No Hit
TTATAGCTCGGCACCTTCACCTTTTTTCACTGGTATTTCATGTAAGGCAT33.296703296703297No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT33.296703296703297Clontech Universal Primer Mix Long (96% over 26bp)
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT22.197802197802198No Hit
CTTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA22.197802197802198Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTGCCCGGCGGGTCATGGGAATAACGCCGCCGCATCGCCGGTCGGCATCG22.197802197802198No Hit
GTGGTGTGTGGAGTACATGCGATCATTACCAGGACCCAAGAGAGGAGTTG22.197802197802198No Hit
GTTCTCTTTATCAGGAAAAATCAGGGTGGTGACCTTGGCCACATCACTGT22.197802197802198No Hit
GCAGCGGCACGATCACGCGGTCGGCCAGCGCCAGCACTTCCTTGAAGCGC22.197802197802198No Hit
CTGTAGTAGTGGTCGTGGTGGCCCATCTTCTCCCTCCTCTCGGAGTTCTT22.197802197802198No Hit
GTGTATAAGAGACAGGTGGTCGCGCCTCTTCGGTCGATGACCGTGCCGCG22.197802197802198No Hit
ATCGAAGGCCGCAACCTGCACGGCACCGGATGCACGCTGTCGTCCGCCAT22.197802197802198No Hit
CGTCGTACTTGAGGGCGATGGCCTGGCGGGGTGGGGCGGCGTTTTTCATG22.197802197802198No Hit
TTAAAAAGATCATTCCCCATGACCAAGTGGGATTTATCCCAGGGATGCAA22.197802197802198No Hit
CATTTAACCCAGTTTAGTGGCAAGTCCTTTAGCGTTTGCCCTTTCCAGCT11.098901098901099No Hit
ATCTGTCCCTGTGAAAGGAAATTGCTGAGGTTCTCAATTTACAGCCAATC11.098901098901099No Hit
CTTTAGACATGACCAGTGCTGGTAGGGCTGAGGCAGCCAGGGCAGAACAG11.098901098901099No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC11.098901098901099Clontech SMART CDS Primer II A (96% over 26bp)
ACATGGGCGGACAGGACGGGCAGGCCGGTGGCGATGGTGGAGGCGTGCAG11.098901098901099No Hit
GCCAAGCTATAAGTCAAATCCATGGACCTGATTGAGAAAACTTCTTCCCA11.098901098901099No Hit
AGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGA11.098901098901099No Hit
CAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAGGTGACTG11.098901098901099No Hit
GTGCAAACCAACTTGATCTTAAGATGTTGTTGAGAACACTGGAGTCACGT11.098901098901099No Hit
TCGGTGTTCTCCACCGCCACCATATGCTCCCCCTGGCGGCCCGTGTAGCC11.098901098901099No Hit
ATGCTTAGGCAACTAAAATGAGGTTGGGGGTAATGCTAACGTCACCCTCA11.098901098901099No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
CAATAAAATGTCCCTAAAATCATCTCAGTACTTGGCACACTGACTTAAGA11.098901098901099No Hit
GGGCCCAGATGTTCAGGCACTTGGCGGTGGAGGCATAGGCCTGGGCCCCG11.098901098901099No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG11.098901098901099No Hit
AGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGAC11.098901098901099No Hit
GTCCCGCTTCTGGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTT11.098901098901099No Hit
GCATTGGGTTTGACCCCCAAAACATCGTAGTAAGTTGTTTCTTTCACCAT11.098901098901099No Hit
CGCCTGCGCTGGTGCAGCCACCCTCGCTCCCTCTGCTCTTCCTCCCTTCG11.098901098901099No Hit
GGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTT11.098901098901099No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
CATTTTCTATTCCATTTTCTCTACTTCTTTCATGTATGTTTGTCCTACGT11.098901098901099No Hit
GTTCTATGTGGATCTGGACAAGAAGGAGACCGTCTGGCATCTGGAGGAGT11.098901098901099No Hit
GCCACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCC11.098901098901099No Hit
GTCATGTTGCTTTCTTTAGGTGGTATTTTCACTATCATCCCTTTGTTTTA11.098901098901099No Hit
ACACTTTCCCATTCATCTTCTCATTGATGATAAAACTGTGACAGGTCTTC11.098901098901099No Hit
GGATCAGATCAAACAGGTGGTGGAAGATCTGAATTCCAGAGAACAGGAGA11.098901098901099No Hit
TCACTCCTTTGTCTTTATTAAAGAAACTTAGACCAGACCTGGCAATCAAG11.098901098901099No Hit
CAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAATAACTCTGCGTTGATA11.098901098901099No Hit
GGCCGGCCCACATCCTTTCGGCACTGGGTGGTGATCCACTGGATCAGGAT11.098901098901099No Hit
ATTCCATTCGATGACATTCCTTTCGTTTCCATTCCATTCGAGTCCATTCA11.098901098901099No Hit
GACCTTCTCCCCAAGCTTAAGCTATCACGCATCAGCAGGAGACTCCTGTC11.098901098901099No Hit
CCGACGCCCCTTTGCAGATGCAGCCCTGGGCACACTTGGCACAGCCCACA11.098901098901099No Hit
GCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCA11.098901098901099No Hit
GCTCCACGCCAGCGAGCCGGGCTTCTTACCCATTTAAAGTTTGAGAATAG11.098901098901099No Hit
GAGTAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG11.098901098901099No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
GCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCA11.098901098901099No Hit
CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCA11.098901098901099No Hit
CCAGGTATGGAAAGGGCAAGCAGAGCTCTGATGAGGAATGCCGGCTGCAC11.098901098901099No Hit
GAATAAGAAACTGCTTAGCTAAAGATATTAAAGAGATTTTAAGCAGCTGA11.098901098901099No Hit
TTTCTCCACATTGACAGATTCCCTCATTTTAACGGTTTTTTGGTTGTTGT11.098901098901099No Hit
GTGCACTGGGGTCTGGAATCACAAGGACGAGTTACCGATTGAGATTGAAC11.098901098901099No Hit
CAATAAGAGGACCAGAATCTTCTATTTCCAAGTGCATTGGTTTCTCCTGT11.098901098901099No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC11.098901098901099Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTCGCAGGTGCGCCAGAACTACCACCAGGACTCAGAGGCCGCCATCAAC11.098901098901099No Hit
ACGCAGAGTACATGGGAACTCGGTGGTGGCCACTGCGCAGACCAGACTTC11.098901098901099No Hit
GTTCTATGTGGATCTGGACAAGAAGGAGACCGTCTGGCGTCTGGAGGAGT11.098901098901099No Hit
ATCCAGAGTCACCTACCTGCAGATCCAATTTCTGTGACCGGCCAGTTTAT11.098901098901099No Hit
CTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTG11.098901098901099No Hit
CCGGATTCTCCCGCGTCGACGGCCTGCCCGTCGGTGTCGTGGCCAACCAG11.098901098901099No Hit
GTCTCCAGATTTCACAAATGAAAACCCCCTGGAGACGAGGAACATTGCCT11.098901098901099No Hit
GCCAGGAATCCGTAGTTCCGGCCGTTGGGCAGCTGCGTGTCGACGATGCC11.098901098901099No Hit
GTTGTATAGGATTGCTTGAATGGCTGCTGTGTTGGCATCCTGTCTCTTAT11.098901098901099No Hit
CCGTACAGCTCCCCGATCAAGGGGGGCACCCAGCGGGTTGTGTGGAACAC11.098901098901099No Hit
TCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCC11.098901098901099No Hit
GGCTTGTTATCTGGAGTCCCTAGCAGGCTGAAAACGCTAAGATTTGATAG11.098901098901099No Hit
GATACCACTGCTTCCCAAGTACTCTGCGTTGATACCACTGCTTCCCATGT11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
AGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGC11.098901098901099No Hit
GTGGAAGAAACTGCGGAGGGAAAGCTGGGAACGAGAGGTTAAGCAGCTGC11.098901098901099No Hit

[OK]Adapter Content

Adapter graph