FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCAGCCCCAGCATGGCGCGGAAGGGGAACTTGGACTGTCCCGCCGCC24.878048780487805No Hit
AATGGAGTGCGAGATCTCGCTGAAGAATCCGCGCACGAACTTGCCGATGA24.878048780487805No Hit
GAGATATACAGTCAAAGGAGATCATTTGGGAGCTTTAAGATTTGACTGTC24.878048780487805No Hit
GCTTTTGAGAGGTCATGAATTGTGATTCAGTAATAGCTGTCTCTTATACA24.878048780487805No Hit
GCCGGCCACCGTGCCCCGGATGCCGCCGCCGGCGGTCGCCTGGAAATCCG24.878048780487805No Hit
CCCTTATTACATCAAACAACAAAGTGTAGGTGAACTACTTCCTGTCTCAC24.878048780487805No Hit
AGCCTACAGTTCACTTTAGCAAATTAGTCCTTTGCTCCTGTCTCTTATAC12.4390243902439024No Hit
GTACCTGCTATGCTCGCAGGAAAAACCCTTGTTAGCTTAACTGTGGATGG12.4390243902439024No Hit
GGCCAGAACTGTACCTGGCAGAGCTGGGATGCTGGTTCTGCCACGTATTT12.4390243902439024No Hit
GATTTAATGAGCCCTTCGCAGTTTCACTGTACCGGCCGGGCGTACTTAGC12.4390243902439024No Hit
GGGGGGCTCTTCCCTAGAGGCCTTGGCCGGCTGCCTCCAGGCTGTCTCTT12.4390243902439024No Hit
TACAAAGTGACCACAGGCCACCAGCCTGTTGAGAAGGATGTAAGACCGGA12.4390243902439024No Hit
GTCGCCTTCGATCAGCACCTCGGCGATCAGGTCGTAGCGCCCGGTGACGA12.4390243902439024No Hit
GGTTATTACAAATTGTATCTTTCATTTCCTGAGAGTAACTGCCTGCTTGG12.4390243902439024No Hit
GTTAGTGCTACTGTAATGGTAGCCTCAATTTCCTCTTTAGTTATGAGGAG12.4390243902439024No Hit
ACACATGTCTTTTCAGTTTCCAGCACACAAACATTGTGCAAACGCACAAG12.4390243902439024No Hit
CTATGCTGTGGGCTGCCTTTCCTGTCCCCAGTCCCTTGTTGTTTGCCCCC12.4390243902439024No Hit
GGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCATG12.4390243902439024No Hit
ATCCAAATGAGAAAGAAGTAAAAAAAGTCTGGGCCGGGTGCAGTGGCTCA12.4390243902439024No Hit
CTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACC12.4390243902439024No Hit
GAGCGGCAGCAGCCCCAGCTTCAGCGTGAAGCGTCGCGGCGCCGCCCGGT12.4390243902439024No Hit
CCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGA12.4390243902439024No Hit
TGACACCATCATGCTGTTTAAGAAGTTCAACGGCGTAGGAACCCCCTATT12.4390243902439024No Hit
GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG12.4390243902439024No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG12.4390243902439024No Hit
GACCGTGGCGAGCAGCCACAGCGACGCGGTCACCACTATGGTGCCCGGAA12.4390243902439024No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG12.4390243902439024No Hit
CGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAA12.4390243902439024No Hit
GCTTCATCCTGTGGGGCACGCTGGCGGCGGTGATGCGCTTCATCCCCTAT12.4390243902439024No Hit
TAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCA12.4390243902439024No Hit
CAGTTAACAATGATAATTGTCAGTTGGACGCAGTGGCTCATGCCTGTAAT12.4390243902439024No Hit
GGCTGCTGCTTGCGCTCATCGTGCTCTGCGCCGCGGCCGCCGGCGCCATC12.4390243902439024No Hit
ATCCGTAGGTCACCAACATCGAAGACCAAAGGTAGATAAAACCACAAAGA12.4390243902439024No Hit
CTATTATATCACAGGTGAGACCAAGGACCAGGTAGCTAACTCAGCCTTTG12.4390243902439024No Hit
AGCTGATTGCTCTCGATGCCCCCGAGGATCGGTCGCCCGTTGATCACACG12.4390243902439024No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)