FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAA37.894736842105263No Hit
TAACTAACCTCTTCAGGCTTTATCAGGCCTGGAGGGGAACCTTGCTCATG25.263157894736842No Hit
TCGCCAGGCCGCTCTCGCCTGCGCGGCCGGTGCGGCCGATGCGGTGGATG25.263157894736842No Hit
GCCCTGTCTCTGAGCACGGAAGGGACCTCAAGGTGCCCTGCACCTCATTC25.263157894736842No Hit
AGGAAAGCGCGCGGTCGGCATCAAAAATGTTTCGGCTGGCGAACCGTTTT25.263157894736842No Hit
CTCCTGCTGGGCCTTCGGGGCTGTGGAAGCCATCTCTGACCGGATCTGCA12.631578947368421No Hit
GGCCATCGCCAATTGAGAGTCCAGGTTGCTTTCAACAATTCCAGAGCTTC12.631578947368421No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGCTCCAAACTAATCTCGTA12.631578947368421No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT12.631578947368421No Hit
TTTCAGGCCCTCCAGAAATATCTGTTTAATTGAGAAGCAACTCCAGCTCT12.631578947368421No Hit
GTTGTGGCAGGAGTTCCCGGGCCCCTGGGCACCACCTCTGCCCACTCCCA12.631578947368421No Hit
CAGGAAGGCCGGGTCCCCTCCGGAGGGTGCTGAGCCTGCATCTCGCCCCT12.631578947368421No Hit
ACCACCATCACCCCAAAGATGCTGGCAGATTTATTATCAGAGAAGAAAAC12.631578947368421No Hit
TCGTGAGACAGGTTAGTTTTACCCTACTGACTGTCTCTTATACACATCTC12.631578947368421No Hit
GGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGC12.631578947368421No Hit
TCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGCTGTCTCTTATAC12.631578947368421No Hit
GTACAAGGGCACGGCTCCCGCCATCACCGACCTGATCGGCGGCCAGATCG12.631578947368421No Hit
GGGTTCGGCAGAGACGCCCGCCGCGGGAGCTCCCGCCAGCGGCGCCACCC12.631578947368421No Hit
GACTCTGATTGCTCAGTCCACACACAAGTAGGAGTTGCCTTCTATGGTGA12.631578947368421No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG12.631578947368421No Hit
GATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGA12.631578947368421No Hit
GTCCACCTAGGCCTCCTAAAGTCTTGGGATTAGAGGTGTGACTTTGGGAG12.631578947368421No Hit
GTGCAGTGGTACAATCAAAGCTCACTGCAGCCTCAGACTCCTGGTCTCAA12.631578947368421No Hit
GTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCTCCGGGTCAGTGG12.631578947368421No Hit
GTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGCGGGAGTAACTA12.631578947368421No Hit
GTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCGTTTCC12.631578947368421No Hit
GTTCTTCTCCTGGCCAGACACTTGGGAGGAGATGGGCTACTGAGCCACTT12.631578947368421No Hit
CCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACA12.631578947368421No Hit
ATTTTGCGTTACTTGCCTATCGAGACTAGCCATTTGAGTATTGCCGGCAA12.631578947368421No Hit
AAGCACGCAACCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATGTATTA12.631578947368421No Hit
CTGTGAGTTGAACGCACACATCACAATGAAGTTTCTGAGAATCATTCTGT12.631578947368421No Hit
GAATCATACTGAATGGACAAAGGTTGGAAGCATTCCATTTGAAAACCAGC12.631578947368421No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)