FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT37.894736842105263No Hit
TCTTCTCAGGAGTCATGTTCACGGCCGTGGGCGGCGCCTTCGCCATCGGC25.263157894736842No Hit
GCCGACAGCCCCGCGCAGTCGAGTGAGCTCAACTTCCAGCCGCAATTGAT25.263157894736842No Hit
CTTCAGGACTCTCTGTCCGCCCCTTGCCTTCCCTCTCTCTGTTTTTCTGT25.263157894736842No Hit
ACCTTCTCCATCGGCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCT12.631578947368421No Hit
ATCACTAATGTGCACAAGTCACATTGCCGGCAATACTCAAATGGCTAGTC12.631578947368421No Hit
GTGGTCCACTCCCAGGGAAATGGGAAGAAACCATTCTGGGTTTTCTAGGT12.631578947368421No Hit
TGCTGCCACAGCACGTGAGCAGGTCCTCCGCCGACACCTCCACGCTGACG12.631578947368421No Hit
CACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACTGTCTCTTATAC12.631578947368421No Hit
GTCACGAGGTAATTTGGGAAAACATCATCTCTTCAAAAAGACAAAGGGAA12.631578947368421No Hit
CGCGCCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGCCGGGACCG12.631578947368421No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA12.631578947368421No Hit
CGTCGAGCGTGGGCAGGTCCTTCAGCATCGGCAGCGCGAGCCGCTTCGAG12.631578947368421No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGTACG12.631578947368421No Hit
GGCTGGTCTCGAACTCTTGACCTCAAATGATCTGCCTGCCCCAGCCTCCC12.631578947368421No Hit
TATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCATAATC12.631578947368421No Hit
GCTCACCCGGGTGGCGCCGCTGGCGGGAGCTCCCGCGGCGGGCGTCTCTG12.631578947368421No Hit
GTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGG12.631578947368421No Hit
AAATAGGAGTGGTGAGAGAGGGCATCCTTGTCTTGTGCTGGTTTTCAAAT12.631578947368421No Hit
GGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGC12.631578947368421No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12.631578947368421No Hit
CTTGAGACCAGGAGTTCAAGACCAGCCTGGGCAACATAGCCAGACACTGA12.631578947368421No Hit
AGCCATGTCACCATAGAAGGCAACTCCTACTTGTGTGTGGACTGAGCAAT12.631578947368421No Hit
TATGTATTGTGTGTAACTTCCAAGAAGTGTTCTTGGGGGTGGGGGAGGTA12.631578947368421No Hit
GGCGATAAAGAAGTACATCTGTAGGAAGCAGCCAGCAAAAGAGATGGTTT12.631578947368421No Hit
TCAGTAGGGTAAAACTAACCTGTCTCACGACTGTCTCTTATACACATCTG12.631578947368421No Hit
GGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCTT12.631578947368421No Hit
GCCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGA12.631578947368421No Hit
TGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA12.631578947368421No Hit
TATGTATTGTGTGTAACTTCCAAGAAGTGGTCTTGGGGGTGGGGGAGGTA12.631578947368421No Hit
ACGTCTCTGAGGCCTGGCCGGAATACTGATATTCTGTGCCATGTTGTCTT12.631578947368421No Hit
ATAAGATACGACCAAATTCATTATGATTTCACTTTTATGGTTAAATAGAT12.631578947368421No Hit
TGTGCAATTGGCAAGTGGTGATTTCAACCGCTTTGAGGTCAATGGTAGAA12.631578947368421No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)