FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3859
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCATTACGATTCGCCTGCTTGCTTCTCCTGTTCAATCGTTTCTTTGGA90.233221041720653No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT80.20730759264058046No Hit
GTTCTCTTCTCTGCAGGGCGAGGGGCAGGGAGCTAGTAGAACCTCGCAAT70.1813941435605079No Hit
CTTCATTGTAGATCAAAGCCAAGGCCCCCAGGAAGGTGACATACTCCTGG60.15548069448043533No Hit
CCTTTGCAGATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAGCA60.15548069448043533No Hit
AGCACACCCTGAGCAAGAAGGAGCTGAAGGAGCTGATCCAGAAGGAGCTC60.15548069448043533No Hit
GAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGT60.15548069448043533No Hit
GCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCC50.1295672454003628No Hit
GACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCA50.1295672454003628No Hit
CACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTT50.1295672454003628No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA50.1295672454003628No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC50.1295672454003628No Hit
GTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGCCTCGCT50.1295672454003628No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC50.1295672454003628No Hit
CCTCCCTACCGCTCCAAGCCCAGCCCTCAGCCATGGCATGCCCCCTGGAT50.1295672454003628No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.1295672454003628No Hit
CCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGCCTCGCTTCGCTTT40.10365379632029023No Hit
GTGGTGGGCCCAGTAGACCCTGCAGCCATCCATCCAGCCTGCCCACTCAC40.10365379632029023No Hit
CCCTGCATCGGATCACCGGCGTGCCCCACCATGTCAGACGCAGCCGTAGA40.10365379632029023No Hit
GTACATGGGACAGTGGTGTCCGAGAAGTCAGGCACGTAGCTCAGCGGCGG40.10365379632029023No Hit
TTTGCACTCTTTGCATTTGCAGGAGCCGGCGCAGGTGCAGGAGTCACCGG40.10365379632029023No Hit
GACTCAGAGAGGACCCCCAGAGGGTGTCTCCATCTTCCCTATTTATTTTC40.10365379632029023No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG40.10365379632029023No Hit
GCCTTCGGGCACCTTGGTCGAGGTGTTGTGCGGGCAGCCCGAGCAGTACC40.10365379632029023No Hit
GAAAATGTACCTATACGCGGCCAGGCACGGTGGCTTGTGCCTAGCACTTT40.10365379632029023No Hit
GTATCAACGCAGAGTACATGGGATCCCCTCGACCGCTCGCGTCGCATTTG40.10365379632029023No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG40.10365379632029023No Hit
TTTTAATCCCCTGCATCGGATCACCGGCGTGCCCCACCATGTCAGACGCA40.10365379632029023No Hit
GACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGA40.10365379632029023No Hit
GGCCTGGACATCGGTCCGGAATCGGTGTCGCGCTTCGCGGCGGTGCTCAC40.10365379632029023No Hit
GTACATGGGGGAGCGGAGCTCAGGGGATGGTGCGCCCGGCACTTATGCTG40.10365379632029023No Hit
CCGTAAAGCAGCTCGGCCGAGCAGACTGCTGCGGTTCCTGGGTGGCGGCG40.10365379632029023No Hit
GGGCCAGGCTGTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCC40.10365379632029023No Hit
GCTGTAGACGCCGGGAAAAGGCATAAAGTCCGTTGGCCGACACCTTTCTT40.10365379632029023No Hit
GCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC40.10365379632029023No Hit
TGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACTGCCCATGCTG40.10365379632029023No Hit
GTCTTGAGGACCTCTGTGTATTTGTCAATTTTCTTCTCCACGTTCTTCTC40.10365379632029023No Hit
CCCGTGCACTTCACACCGCTAGACAGCTCCGTGGACCGCGTGGGGCTCAT40.10365379632029023No Hit
GGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTT40.10365379632029023No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)