FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3859
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG70.1813941435605079No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT60.15548069448043533No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC60.15548069448043533No Hit
GGCTGAGATCGAGAAATTCGATAAGTCGAAACTGAAGAAGACAGAGACGC50.1295672454003628No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA50.1295672454003628No Hit
CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG50.1295672454003628No Hit
CCCTGGATCAGGCCATTGGCCTCCTCGTGGCCATCTTCCACAAGTACTCC50.1295672454003628No Hit
CCGCCACCGGTCGAGATGTGCGAGAAGCCGTCGTCCGGCAGGCCGAGCTG50.1295672454003628No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT50.1295672454003628No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC50.1295672454003628No Hit
ACGCAGAGTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCA50.1295672454003628No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG50.1295672454003628No Hit
GTCTAGTCATCCTCGTCGGTCTTCTGCTTCTTGGTATCGACATCGTCATC50.1295672454003628No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA50.1295672454003628No Hit
TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA50.1295672454003628No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG50.1295672454003628No Hit
GTTCCAGCGATTCTCCTGCCTCAGCCTCCCGGGTGGCTGAGATTACAGGC40.10365379632029023No Hit
GCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCC40.10365379632029023No Hit
GCTCTGGACCGTCTCAAGGTGTTTGACGGCATCCCACCGCCCTACGACAA40.10365379632029023No Hit
GATTTAAAGAAAAACAGGTGAAATACAAATAAGCTAGAAGGAGCAAAATC40.10365379632029023No Hit
GTGCTCAGTGCCATGGGCTTCACTGCGGCGGGAATCGCCTCGTCCTCCAT40.10365379632029023No Hit
GGTACGGGGAGGGCGTCACCCTGCAGAACGGCAGAGTGACGCGTCCTCTC40.10365379632029023No Hit
GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTT40.10365379632029023No Hit
CTGCTAACCAGGCCTCTGACACCTTCTCTGGGATTGGGAAAAAATTCGGC40.10365379632029023No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG40.10365379632029023No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT40.10365379632029023No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA40.10365379632029023No Hit
GTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGCTTGCTTCTCC40.10365379632029023No Hit
GTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGCCGCGCGCCTC40.10365379632029023No Hit
AAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCG40.10365379632029023No Hit
CTTCAAGGTGTCGATGCCGTGGCCGCTGGAGCCCGATTCGATCCGCGAGT40.10365379632029023No Hit
GTCCATGAGCCTAGGTCTTGGAGCCTTGTGTTGGAGGCTGCTGTGATGTC40.10365379632029023No Hit
TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCG40.10365379632029023No Hit
TCATAGACGTCTTCCTTAATTTAGGAAGGGAAAAGTCAATGGTTACTCCA40.10365379632029023No Hit
CCTTTTTCCCTCTCTTTCATCCCCGACACTAAAGCAGAACCGTCATGGGC40.10365379632029023No Hit
CCATCAGCCTTGCAATTTCAGCATCCTGCAGCTTCGAGCCAATGGTGAGC40.10365379632029023No Hit
GTACTCGTGCGCCTCGCTTCGCTTTTCCTCCGCAACCATGTCTGACAAAC40.10365379632029023No Hit
GCGACTGCTAGGCCCACCCGGACGGCGTGGTGGAGCGCCACAGCCTGCGG40.10365379632029023No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)