FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003670617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4099
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAATGTACAGTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGC80.19516955354964624No Hit
GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCC70.17077335935594046No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC70.17077335935594046No Hit
GCCTTGATCAGAGGTGTCCTGTCTTCACGGTCGCAGAGGTTAAGCTCACA60.1463771651622347No Hit
GTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGCTTGCTTCTCC60.1463771651622347No Hit
CCACTGGATTTGACTCAGAGAGGACCCCCAGAGGGTGTCTCCATCTTCCC60.1463771651622347No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG60.1463771651622347No Hit
GACCAGACTTCGCTCGTACTCGTGCGCCTCGCTTCGCTTTTCCTCCGCAA50.12198097096852892No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT50.12198097096852892No Hit
TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC50.12198097096852892No Hit
GTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT50.12198097096852892No Hit
GTTGTGGCTGTGCCCATGGTGCTCAGTGCCATGGGCTTCACTGCGGCGGG50.12198097096852892No Hit
GTACATGGGAGAGCGAGCGGCGCCGGCGTCATGTGACTGCCCGGAGTTGG50.12198097096852892No Hit
AATACATGCCGACGGGTGCTGACCCCCTTCGCGGGGGGGATGCGTGCATT50.12198097096852892No Hit
CGTGTATCACATCTAGGCATGGAATCTTATGCCAGCTAACGGAACAAGCT50.12198097096852892No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)