FastQCFastQC Report
Tue 10 May 2022
EGAF00003670653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences761644
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGAACTGTACGCTGTACCTGCATCAGCATTAGTAATCAACCTGTTA21410.2811024573160164No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT9220.12105393070778474No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC9070.11908450667240864No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA8800.11553954340873165No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC8370.1098938611739868No Hit
GTATGTAGGTAGCCACTGAAAGAATTTGGGCCCCTTGGGAGGATGGCAGT8140.10687407765307677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)