FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003671016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003671016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTG32.8301886792452833No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC32.8301886792452833Clontech Universal Primer Mix Long (96% over 26bp)
ATCATCTTCCATCCCCATCCACCTCCGCTCTTTATCTTGATGTCACACCA32.8301886792452833No Hit
CGCATCCTCGGTGTCGGCGGTAGCGGCGGCATCCGGGGCCGACTCGGCTT32.8301886792452833No Hit
GTAGGATGTCCCTCAATTTTTGGTTTGCTGATGTTTTCTGATTTTTAGAC32.8301886792452833No Hit
CTTCTTGGCCGAGATCTCGAAGTAGGCGCAGCGCTGGGGGTCGTCGCCCA21.8867924528301887No Hit
GGAAGCATGGCTGGGGAGGCCTCAGGAAACTTTCAGTCATGGCAGAAGGT21.8867924528301887No Hit
GAGTACATGGGGACCGGACCCTGCAGCCGCAGAGATGTTGATGCCTAAGA21.8867924528301887No Hit
GCTTTCTTAGTGGGCTCGGCCAAGTCTGTGGCCCAGCCTGTCGCTGCGCT21.8867924528301887No Hit
AATTACTGTACCTTTCAAGCTTAACTGCAGTTAAATTTTCTTTTTGCTTT21.8867924528301887No Hit
GGGCTGGAGACATTCAGATGGGGAAGGCTGGCAGGAGGGCACAGATGACC21.8867924528301887No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG10.9433962264150944Clontech Universal Primer Mix Long (96% over 26bp)
GTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGGG10.9433962264150944No Hit
CGCTGGCGCTCGTCGGTGCTCTGCTCCTTCAGCGCCTCCACGTTCACCCG10.9433962264150944No Hit
GGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGG10.9433962264150944No Hit
GTGCTAAACAGTCACCAGCAGGTTCCTCAGGGTTTCAGCCCTAAAATGTA10.9433962264150944No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT10.9433962264150944No Hit
GTGGCCCAACTGATCGTGCTGGAAGTGTTTCCCTCCAGTGAAGCCCTCCG10.9433962264150944No Hit
CACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACCTGTCTCTTA10.9433962264150944No Hit
TGCTTATACACCCTTGGCATTATTTTGAATTGAAATAATTCAACACCTCA10.9433962264150944No Hit
GCGACGAACGTCGCGACGAATGTGCCGGCCACGCTCCCCCACCTGCCGAG10.9433962264150944No Hit
GAATGCGGATCGCTTCAAGCAGGCGAAGCGTGCCGATCCCGTCCGCATTC10.9433962264150944No Hit
TGTTTTAAACACATACCCATCAACGACAAGATTGGGGAAGTGAATGGCTT10.9433962264150944No Hit
GCCCTGGGGCCGTGTCCGCCGGGCAACTCCAGCCGAGGCCTGGGCTTCTG10.9433962264150944No Hit
GGCGTGACTACGTGCGTCGCGACTCGGGGAGCTTGTAGCCCACGAACCAG10.9433962264150944No Hit
GTGATAGAGGGCGCGCAGATCATCAAAAAAGGGCTGTAACGGCCAGACTG10.9433962264150944No Hit
AAATAAGACTTCTAACCTTGGTCAATACTAAATCTCTGCCAAACCCAAGC10.9433962264150944No Hit
TTTTTTTTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCA10.9433962264150944Clontech Universal Primer Mix Long (95% over 21bp)
GCTCGCCCCCGTCGACGGCGGCGCGGCAGGCGTCTGTCTCTTATACACAT10.9433962264150944No Hit
GGGGAAGGGGATGGACGGTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCG10.9433962264150944No Hit
TTTTTAAACTCCTGAAAAATATCCCAGATAACTGTCATGAAGCTGGTAAC10.9433962264150944No Hit
GTGAATCCACCATTCTGCGGTCTGGAGGATGGTGGCCCTCTTCTCACATC10.9433962264150944No Hit
CGCGCAATCCGCGATCTCGTGGACCAGCGCCCGATCCGCACCCAGCAGGA10.9433962264150944No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGCTGTCT10.9433962264150944No Hit
GAAGGAAAACTCTGCAGAATGGACTGCAAAGTCAGTGGGTTACCAACCCC10.9433962264150944No Hit
ATGTAAATTTGATACTGTCATTATGATGCTAGCTGGTTATTTTGCCCATT10.9433962264150944No Hit
GATTACAGGTGTGCGCCACCACATCTGGCTAATTTTGTATTTTTAGTAGA10.9433962264150944No Hit
CTCAAAGCATGGCAGCGGCAGAGGCTGGAGCAGTTGGGGATCTTCAGCTT10.9433962264150944No Hit
GGTAACTATCTTCCTGCTGGTGACCATCAGCCTTTGTAGTTACTCTGCTA10.9433962264150944No Hit
CCAGTGGAGGGGCCATCTGGCCTGCCTGTCCTCCCAGGAAGGTTTGCAGG10.9433962264150944No Hit
ACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG10.9433962264150944No Hit
CCTGGCCGACCGGCTCGCGATCGAGCTCGGCCAGGCCGGGCTCCCCGACC10.9433962264150944No Hit
GTTGGGAGAGGAGCAGAGCCAGGCCGGTGCTCCCGAAGGCAGCAAGATGT10.9433962264150944No Hit
GCGCTATCTCGCGCCTGCTGCATGAAAAACCGACCTACCGCTACAAGCTG10.9433962264150944No Hit
GGGCCTGGGACAAATTTGATCTGGAGGTTGACGCGCGTCAGGGCCACGCC10.9433962264150944No Hit
CTATATGAGAAGTGAGCATTTATAGACAGAACCTGGAAGTAAAGCACAGA10.9433962264150944No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.9433962264150944Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG10.9433962264150944No Hit
CACAAGCAGAAATCAATAAGACAAAGATAAATACTCAAAACTTAATAAAG10.9433962264150944No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTGGGCTGTCTCTTAT10.9433962264150944Clontech SMART CDS Primer II A (100% over 26bp)
CCCCAGAGCTATGCCAACAAAATCTGTTACGGAGTAAAGCCCTGAAGCTG10.9433962264150944No Hit
CATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGG10.9433962264150944No Hit
CTCGTCGCCCAACTCGGGCTGGGCAGCGACGACGTGGCGCCTGTCTCTTA10.9433962264150944No Hit
TCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTA10.9433962264150944No Hit
GGGCCTAACCTGGCAGGTGGCTAAGCTGGATGGAGAGGAACAGCGCCCCA10.9433962264150944No Hit
GCTGGACGAGCTGCTCCATCGCCAGCGTCATGAAGTCCTGGTACCTGTCT10.9433962264150944No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACCTGTC10.9433962264150944No Hit
GTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTT10.9433962264150944No Hit
CCCGGTTACCGTCCCCGACAAGCTAAGAGTCGAGTGCGGTACTTACCTCG10.9433962264150944No Hit
GTTATGGAGGTTAGAAGTCCAAGATCAAAGTGTCAGCAGGTTTGAATTCT10.9433962264150944No Hit
GCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCG10.9433962264150944No Hit
AACAGGAGGTGGGGACAACTGGAAGCCATTTTAGAAGGCTGCCTACAGCA10.9433962264150944No Hit
GTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGC10.9433962264150944No Hit
CACACACACACACACACACACACACAATGCCTAGGGATGTCATTTTGACT10.9433962264150944No Hit
CACAAGCAGAAGTGTATAAGAGACAGCACATTAATCAAGAATTAGTTCAA10.9433962264150944No Hit
TTCTTAGTGGGCTCGGCCAAGCCTGTGGCCCAGCCTGTCGCTGCGCTGGA10.9433962264150944No Hit
CGCGACTACCTGCGCCGCCGCACCTGGCGCAACCTTCGCAGGCTAGCGCT10.9433962264150944No Hit
CAGGTTCCCCGCGCGCCCCGAGCCCCCGCGCCATGAAGCTCGCCGCCCTC10.9433962264150944No Hit
GGGTAAAGGAAAACAAGTGACACTCCTACCTGGCTTCAAGGTCAATTGTG10.9433962264150944No Hit
GACAAACGAGATGACAACAAATGGATCAAATTGCATGCTGACCAAGAGTA10.9433962264150944No Hit
GAGCAGTTGGCTGTGAGAGAGGGAGGGCTGGTCAGGGTGACTCACTATGG10.9433962264150944No Hit
CTTTATCTTGATGTCACACCAAGTGTGATAGCGCCTCCAGCAGTTTCTTC10.9433962264150944No Hit
GGTTCTTCAACTTTTGATTTGCTAGAACCATAACTGCACCCTGTCTCTTA10.9433962264150944No Hit
GTGGTATCAACGCAGAGTACATGGGGAGGGAAGGTGAGTCATGCGTCCCA10.9433962264150944No Hit
TCCTTAGCCCCTCCACAAGGTGCTCAACAGAAATGCCCAGAGTTTTCAGA10.9433962264150944No Hit
GCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCT10.9433962264150944No Hit
CTGCATCCGCGTCGACGACGACGGCGCCGGCGTGCCGGAAGCGCTGCAGG10.9433962264150944No Hit
CCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACC10.9433962264150944No Hit
CTGCTGCAGGATGCTGGTGGCGTTGTGGTCCTTCAGCTCCTGTGTCAGCT10.9433962264150944No Hit
GGGTTGAGGGTGCCGAGGGGGTTGGCCAGGGTCCCGGCCCCGGCCTCCGC10.9433962264150944No Hit
GTTGCGGACGGTCTTGGTGGAGACCCCCAGCCTGTCTCTTATACACATCT10.9433962264150944No Hit
CCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCA10.9433962264150944No Hit
GTTCATAGGCACAGCCTCCCTTATCGTGTGTGTGCTGGCCATTGTTGACC10.9433962264150944No Hit
CGCAGCCTCGGTGTCGGCGGTAGCGGCGGCATCCGGGGCCGACTCGGCTT10.9433962264150944No Hit
CACATCGATCCGAGCCTGCAGACGCCGGAGGAGGAGCGCGCCGACATGGA10.9433962264150944No Hit
GATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGG10.9433962264150944No Hit
ACTTGTCAACAGGAAGGGGCACTTTGTTGATGAGGAAGGCAGTAGCAGAG10.9433962264150944No Hit
GTATTATTAAAAACATATGGATCCCCATGAAGCCCTACTACACCAAAGTT10.9433962264150944No Hit
TTTCCAAGGGGAATGCTTCCAGTTTTTGCCTATGCTGCATGATATTGGCT10.9433962264150944No Hit
GGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGC10.9433962264150944No Hit

[FAIL]Adapter Content

Adapter graph