FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003671018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003671018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAAATTGAACAGAAAGGCTGTTAAAGAGGACTAAGCATCATTCTGACAT32.586206896551724No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG32.586206896551724No Hit
GCGCAGGCGGTCCCGGCGCGGCCAGGGGCGCCGAGGGCGCATCGGCAGCC21.7241379310344827No Hit
CCTAAGGACTGCCCATTGAAACTGACAAAATTGTCCTTGTTTGATGAGAG21.7241379310344827No Hit
GGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGG21.7241379310344827No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG21.7241379310344827Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCCCCGCGCCATGAAGCTCGCCGCCCTCCTGGGGCTCTGCGTGGCCCTGT21.7241379310344827No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG21.7241379310344827No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA21.7241379310344827No Hit
CATACGTATAAGTCTTTAATCCATCTTGAGTTAATTTTTGTATAAGGTGT21.7241379310344827No Hit
GTGCTGTGGCTCATGCATGTAATCACAGAACTTTGACAGGCCAAGTTGGG21.7241379310344827No Hit
GTCAGCAGCCGAAGCTTCTTTTCGTTCCTTGGCGAGGCTTTTGATGGGGC21.7241379310344827No Hit
GCCAGGTGGCTGCTTGCGCGGTCTGCCAGCCGGAGTAGTTCGAGACTGTC21.7241379310344827No Hit
GGACTCGGTGAGGGCGTGGCCGAGCTTGTTGCTGTCTCTTATACACATCT21.7241379310344827No Hit
CGCGACTACCTGCGCCGCCGCACCTGGCGCAACCTTCGCAGGCTAGCGCT21.7241379310344827No Hit
CCTTGAAGACAGCTTTAGAGACTGCCCCCACACTAGCTCTCCCTGACTCA10.8620689655172413No Hit
GATCTGCTACGTACGAAACCCCGACCCAGAAGCAGGTCGTATACGACTGG10.8620689655172413No Hit
AGCTGGGTCCCCAGGCCGTGGGGGCCGTGAAGGCCCTGAAGGCCCTGCTG10.8620689655172413No Hit
GTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAGC10.8620689655172413No Hit
CGCCCCCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTAT10.8620689655172413No Hit
GCTACTGCCTTCCTCATCAACAAAGTGCCCCTTCCTGTTGACAAGTTGGC10.8620689655172413No Hit
GTGAGGGCTGTGGAGGGTGACCCGATTCCCAGGGCATCACCCCCTCAGCT10.8620689655172413No Hit
TCAACAAAGTGCCCCTTCCTGTTGACAAGTTGGCACCTTTACCTCTGGAC10.8620689655172413No Hit
GTGTGTAAATGAGCTGGGACCAGAGGCTTCTGAAGCTGTGAAGAAACTGC10.8620689655172413No Hit
GGCTTGAGGACGACGACGAACAGCGCCTGGTCGAGCACGATCATCTCGAT10.8620689655172413No Hit
CATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGA10.8620689655172413No Hit
AGGTCTCCTCTGGGGACTTGGTTGCCTTCTTGGTCCACCTCAGCCTGTTG10.8620689655172413No Hit
TCGTCTGGGACTGTATGACTACAACCTGCCGTTTATCGCCGTGCCATTAA10.8620689655172413No Hit
GCGCCCCCCCGGTGTCCCCGCGAGGGGCCCGGGGCGGGGTCCGCCGGCCC10.8620689655172413No Hit
CACCAAGTGTGATAGCGCCTCCAGCAGTTTCTTCACAGCTTCAGAAGCCT10.8620689655172413No Hit
TCTTAGAGTAGATGGTTAAAGAAGAGCTTTCTGAGGAAGTGACGTTTAAA10.8620689655172413No Hit
GTACTAACAAAGGAAAAAACTATACTGAAGAAGAAGATCGTTTTCTGATT10.8620689655172413No Hit
GAGTACATGGGACACTTTGTATGGCAAGTGGAACCACTGGCTTGGTGGAT10.8620689655172413No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.8620689655172413Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACACAGAGTACATG10.8620689655172413Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CTTCTGGGAGCCCTCTATGAGGTGGTTCACGGGGATGCCCAGGCTGCTCA10.8620689655172413No Hit
GATGAGCTGGACAAGCCCCTGGGGAGACTGGCTCTGAAGCTGGGGGGCAG10.8620689655172413No Hit
GCCCACACCACCTGCCAGGCCCTCGGGGTGTGTGGGACCATGTCCAGCCC10.8620689655172413No Hit
GCCCTGGGAACTCTGGCACCTTGGGCTGTGGAAGGCTCTGGAAAGTCCTT10.8620689655172413No Hit
GCCTTGAACGACAGCCCGCCGTCCAGCCGCTTGAACACGAGTCCTTCGCG10.8620689655172413No Hit
CCTTGGTCCAACATACTTGACTGATGCGTGCCCAGCTCGTCCTAGTTGAC10.8620689655172413No Hit
ATATGAGACTATCCTTTGGGTTGAAATGTAGAAATTAAAGGAATGCACAA10.8620689655172413No Hit
CTCAGGACTTCATACCTGGAAGCTCAGTTCTTAATGACAGAAGCCTGTCT10.8620689655172413No Hit
ATCCTGTCCTCTGCCTTGTTTACAAGTGACACTTTGAGACACAGGGCAAG10.8620689655172413No Hit
ATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGT10.8620689655172413No Hit
GCCAAACACTGTCAGGGCCCCCAGCAGGGCCTTCAGGGCCTTCACGGCCC10.8620689655172413No Hit
ACCCACATCATGTCAGGAAAAACAGATCTGGACAGCTGCCAACACTGAGA10.8620689655172413No Hit
GCGGTGACGTGGGCGGCATCGAGTATGAGAACTTCAATGCAGCTGCCGCC10.8620689655172413No Hit
TTTGAGTACAGCGTCTTTCGCCATTACACTTTGTAAAGAATCTAAAACTT10.8620689655172413No Hit
GTCCCGGCCCCGGCCTCCGCCGCCGACTCCAGCGCAGCGACAGGCTGGGC10.8620689655172413No Hit
CCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGTATTCCTAGGTATTTT10.8620689655172413No Hit
GGGCAACAATGTCACTTCAGAATGAACCTATGATGCAATGTACTTGTCCC10.8620689655172413No Hit
GATCCAGACAAGAGAATTTCTATTCGAGCATCAGACAAGCGGATAGCTTG10.8620689655172413No Hit
TAGTAAGATTCGGGAATTTCAAACACATATTGATCAACCTCAAAGTTTGT10.8620689655172413No Hit
CCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGG10.8620689655172413No Hit
CGCCGGGCAAGTAGGTCGTCAGGTCGGCCAGCGACGCGGCTGTCTCTTAT10.8620689655172413No Hit
AACATTCCGTTTCAGAGACCAGCTTTGAAGCACTCTTTTTGTAGTATGTG10.8620689655172413No Hit
GAATTGCTGGCGAGTTGGTGAGTTTTCAGCAGGAATGTAAGGTAAATCAA10.8620689655172413No Hit
GAGTAAATAAACGAGAGAGGATGGAAAGTACTCACAGTCGAATGCCAACT10.8620689655172413No Hit
CCTGCATGTCATCCAAAAGGAAGATTTTTTTTCTTCTTTTCAGATGGAGG10.8620689655172413No Hit
CTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACATGA10.8620689655172413No Hit
TTTATGTATTCATTGCTTTATTTGTCCTTTTCACGGGTCACTACATTTTA10.8620689655172413No Hit
GTTATCTCGATCCTCAATGCGCACCGCTTTGCGCGTCATCGTCAAACCGA10.8620689655172413No Hit
ACCCTATCGTTGCAACATCTGTGGGGCCCAGTTCAACCGGCCAGCCAACC10.8620689655172413No Hit
ATCAGACGCCTTTCAAACTCTTATACCAATCTCTGGAGTTTGGCAACATG10.8620689655172413No Hit
GTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGC10.8620689655172413No Hit
TTTGTAGTTACTCTGCTACTGCCTTCCTCATCAACAAAGTGCCCCTTCCT10.8620689655172413No Hit
CCACCACACACTGGCAAGATGAAGGTAAGTCTATTGATTGAAAGAAGAAA10.8620689655172413No Hit
GATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGA10.8620689655172413No Hit
GGGTACGCCGTGCTGGCTGCCGCCGCGGTCGCCCGCGCCGGTGGCTCGCC10.8620689655172413No Hit
CTCTGGGCTTTTGGGGGAGGGTGTCCACCAGCTTCTTCAGCTGAGCCCCT10.8620689655172413No Hit
CCTTTTCCCCTCATTTTTGATAGTTGCAGATTGATGTAGTAACTGTCATT10.8620689655172413No Hit
CTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTTTGTATTTTCAGTAG10.8620689655172413No Hit
GCTCCTCGCCGCCGACCTGGACATGATCCTGGACGCCGTGCCGGAGGCGC10.8620689655172413No Hit
CCACTAAAAATGCAAAAAATTAGCTGGGCTTGGTGGCAGGTGCCTATAGT10.8620689655172413No Hit
GGGCTGAAGGGAGCAAGAAAGCTGTAGCTGTGTGGGGCTGGCAGGATGTT10.8620689655172413No Hit
AAATTCATCTATGCTCAGCTTTTTACGGTACACTTGGTGGGAGTAAAATG10.8620689655172413No Hit
GGCTAACACGGTGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCG10.8620689655172413No Hit
ATCCAAATGCTACCAGCTCCAGCTCCCAGGATCCAGAGAGTTTGCAAGAC10.8620689655172413No Hit
TCTCCGGCGTGATGGGGATGTCGATGTGCTTCACACCGAGGCTGTCTCTT10.8620689655172413No Hit
AAGCCGGCCACCGCTCGGCAAGGGTCTCGCCCGCTTGAGCGAGATCCATA10.8620689655172413No Hit
GCCAAGCCTGTGGCCCAGCCTGTCGCTGCGCTGGAGTCGGCGGCGGAGGC10.8620689655172413No Hit
CATTAAAGCTTCTTCTGAAAACTCTGGGCATTTCTGTTGAGCACCGTGTG10.8620689655172413No Hit
ATCAACGCAGAGTACATGGGACACTTTGTATGGCAAGTGGAACCACTGGC10.8620689655172413No Hit
TGCCAGACTAGAGTCAAGATCAACAGGGTCTTCTTTCCCCGCTGATTCCG10.8620689655172413No Hit
GCCTTACCAACATGGTGAAACCCCATCTCAAATAAAAATACAAAAATTAG10.8620689655172413No Hit
AGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACCTG10.8620689655172413No Hit
CACTCGATGATTCCATTCGATTCCATTCAATGATGATTCCATTCGAGTTC10.8620689655172413No Hit
GGATGGTGAGATGAAGAAACTGCATTTTCATGCTGATTCAGTTCCTCTTG10.8620689655172413No Hit
GATTTCCTGCTTAAACGGATTGAGCCAGTGTCCATCGCCGTAATCGACCC10.8620689655172413No Hit
GTGGCCAGCAGCGAGATCGTCGAACCGTCGATCTCGATCCGGACCCCTGT10.8620689655172413No Hit
CTTCTCGAGACGTTCCCAGGGCTGATCGGCGTCAAGACCGGCCACACCGA10.8620689655172413No Hit
GGATTGATCCAACTACAGCTTCCGCCGCTTCAAGCGTGCAACCGCCGGCA10.8620689655172413No Hit
CTTTTGGGAGGGGGGTTGTTTTCTTCTGTTTATTTTCTGAGACTCCTACA10.8620689655172413No Hit
ATCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATAC10.8620689655172413No Hit
GTTGTGTGCCACCACGCCTGGCTGATTTTTGCATTTTTTGTTGAGATGGG10.8620689655172413No Hit
GAATTGAGGCGTTCATGGGTCTCTCGCGGGTTTGAAATAAATGAGGGGCA10.8620689655172413No Hit
GAAACGACACCAGTCAGATGTTGCATCCAATTTTTGAGGAAGCTTCCGAT10.8620689655172413No Hit
CAACAACGTGGTCCTCATTGAGGACAACGGGAACCCTGTGGGGACACGAA10.8620689655172413No Hit

[FAIL]Adapter Content

Adapter graph