FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003671293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003671293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59
Sequences flagged as poor quality0
Sequence length100
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAGAAGAGCTGCCAGGTGAGCTGAGCAGGGATTATTCTCTTTTGCTGC35.084745762711865No Hit
GTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTG23.389830508474576No Hit
GGTTCCCCTTGCTGCCTCCCTTCCTCCGGCGGCGGAGCTGGCTGAGCAGC23.389830508474576No Hit
CCCTGGGGGCCCTCCTGGGCCAGGCACGGGCAGGATTTCTCCTCATCACG23.389830508474576No Hit
GTCCGTTAGGAAAAACAGCCTGTCGGACCACAGCCTGGGCATCTCCCGGA11.694915254237288No Hit
ATGTCCCCATGCCCTGTTGGCCAGAGGCCCGAGTGAGCTGAGTGGGTGGG11.694915254237288No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTGCTGGGAGTGTCGTGGACGC11.694915254237288No Hit
CTGTGCCACAACTGCTGAGTCTGGATCATGGAACTTAACAAAGCAGACAC11.694915254237288No Hit
CGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAG11.694915254237288No Hit
CCCTGACATGCAAGAACAGGGTCCAGAACATGGCTCTCTATGCTGACGTC11.694915254237288No Hit
GGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGC11.694915254237288No Hit
ATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGAC11.694915254237288No Hit
TCCCCATGGAGCTCTGCCGGTCCCTGGCCCTGCTGGGGGGCTCCCTGGGC11.694915254237288No Hit
CTGTAGATCCGCATCCCTGGAGCTCTCGAGGAGCCGCGGTTACCGCACGT11.694915254237288No Hit
CTACTTGGGCGGGGCTGCGGCGTGGGCGAGCGCAAAGGAACACCGCCCCC11.694915254237288No Hit
TATCAAAGCAGAGTACATGGGCCTTTTCCTCCCTGTCGCCACCGAGGTCG11.694915254237288No Hit
ACTGGTGGGTCTGGCAAATGAAGCCCCAGGGCCTGGATTCGATCCTGGAT11.694915254237288No Hit
GAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGG11.694915254237288No Hit
GTATCAACGCAGAGTACATGGGGCTCTCCGCCAGACCGCCGCCGCGCCGC11.694915254237288No Hit
TCTTCAGGTCATCACTTGCCAGCCGCAGGAGGTGGCTCTGCCCCTCACCG11.694915254237288No Hit
AGGAAGACCTGAGGCTCTCCTGGTGTGACAGATGTACAAATATGGCATCC11.694915254237288No Hit
ACCGTGTCCACGCCGGTCCACGAGGTGGCGCCGGCCGCCGTCGGCGCCTC11.694915254237288No Hit
GGCCTCTGGCACGCTCGAACTTCCGGCCCTTGGAGCGGACGTAGGGTTTG11.694915254237288No Hit
GTTCAATGACCTCGTCAGTGTCCCGGAGGGGAATCTCGATGGAGCCCCGC11.694915254237288No Hit
GTTCTACAGCAAGCTGGATCAAGAGGATGCGCTCCTGGGCTCCTACCCTG11.694915254237288No Hit
CTTCTTGCCAAAGGTGGGCACAACGTTGACAAAGCGCCGGTTGTACTGCA11.694915254237288No Hit
TCATCAGGGTTTGCTGAAGATGGCGGTATATAGGCTGAGCAAGAGGTGGT11.694915254237288No Hit
GGTTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAAGATGTGTGAC11.694915254237288No Hit
GGCCTCTTCCAGACCATCATCAGCGAAATGAAGGGGAGAAATCCAGTTTG11.694915254237288No Hit
CTTGCTCACCTTCTTGTTCTGGGGGATGCTGGGCACCAGCTCCTTGAGCT11.694915254237288No Hit
AGCCTGCATTGGGCTCACTCATGGCCAGGGCTCCGATGTACTCACCACTG11.694915254237288No Hit
GTATCAACGCAGAGTACATGGGAGCCCCTCTCCGGCCTCGGCCGGGGGGC11.694915254237288No Hit
CGTCAACATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTC11.694915254237288No Hit
GTCTCTCCTCATGCTAGTAGCTGCCTTCTGCTCTCCAGCGCTCTCAGCAC11.694915254237288No Hit
GCACCTCTACAAGCTGGACCCTGACCGGCAGTACCGGGTGATGAGGGCCG11.694915254237288No Hit
GCCAAAGGTGGGCACAACGTTGACAAAGCGCCGGTTGTACTGCATCCGCC11.694915254237288No Hit
GATGTGATGAGGGCCCTGGGCCAGAACCCTACCAACGCCGAGGTGCTCAA11.694915254237288No Hit
CCCTTGGGCTCTATGGGAAGGACCAGCAGGAGGCAGCCCTGGTGGACATG11.694915254237288No Hit
ACGCAGAGTACATGGGGCTCTCGACTCCATCTTCGCGGTAGCTGGGACCG11.694915254237288No Hit
ACATTGACAAGAAATGCCCCTTCACTGGTAATGTGTCCATTCGAGGGCGG11.694915254237288No Hit
ACTCTGCGGTGATACCACTACGCAGAGTACATGGGCCGCAAGGTGAACCG11.694915254237288No Hit
GTATCAACGCAGAGTACATGGGGGCTGCCCCACCATGGCTACCTAGGCCC11.694915254237288No Hit
CTTCTGGACCCCTCAGGCACTCAGCTCCAGGTCGCTGACATATTTCTGGA11.694915254237288No Hit
GAGACCCACAGGCCGGTGGCATCGGCGCGGAGTGCCCAGGTTCACAGTGC11.694915254237288No Hit
GTACATGGGAAACGACAGGGGAAAGGAGGTCTCACTGAGCACCGTCCCAG11.694915254237288No Hit
CCGCATTGCCATACCTGATGCCTCTAAGCTGCAATTCATCCTAGCAGAGG11.694915254237288No Hit
CTTCTTGGGCGGGGCTGCGGCGTGGGCGTGCGCACAGGAACACCGCCCCC11.694915254237288No Hit
CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCC11.694915254237288No Hit
GTATCAACGCAGAGTACATGGGGACTGGCGCAGCTGCCGTTTCAGGCGAG11.694915254237288No Hit
GAAGAGTCGGTTCCCAGGCCAAGGTCTCTCACCTCATTCGGTCACTTCAG11.694915254237288No Hit
GTCTTAGGACTTCCTTGGACTGTCCTTGGATCTAAGGCTGAGACCTTACA11.694915254237288No Hit
CTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCAT11.694915254237288No Hit
TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC11.694915254237288No Hit
CAAGGAGGAACATGAGGTGGCTGTGCTGGGGGCACCCCCCAGCACCATCC11.694915254237288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)