FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003671294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003671294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTTCCCTGCTCCTTGAGAAGGGGGTGGTTTCGGGGACAAGCCATCCC35.084745762711865No Hit
GTGTGAAAGGCATCTCAGCGGCCGCCCCACCATGGCTACCTAGGCCCTCC23.389830508474576No Hit
CCATAATGTGCAAACACAACCCCCTTCTCCTTGGTCACGATGGAGATGAG23.389830508474576No Hit
GTATCAACGCAGAGTACATGGGGACAGTTCCTCTGGACTTCTCTGGACCA23.389830508474576No Hit
TCTCTTTCCTCTTCTCCTCCAGGGTGGCTGTCACTGCCTGGTACTTCCAG11.694915254237288No Hit
CCATTGCTGTCCTCATGCCCTGCCACCAGCATCTCTACTTCTTCCTCTGT11.694915254237288No Hit
ACACTGGCAAGCTTGCCAATACCCTGGGCAATGACGTCTTCAATGTTTTT11.694915254237288No Hit
CAATTAAAGCGCTCGAAAACTGCCTCAGCTTGGCTTCAATGCTTCTGTGC11.694915254237288No Hit
CCTCACTGTTTCCCGTTGCCATTGATGGGGAGGTTCACGTACTCAGGGGA11.694915254237288No Hit
TCCACACACTGGTCCTGCTGCTGAATGTGGATCTGGGCCAAGCGCTGCAG11.694915254237288No Hit
GCCGCAAAGAGGGGCCGAGGGCCGGGCTAACGCCGTCGCCGCGCCAGCCT11.694915254237288No Hit
GGCTTGTGCTGACGGCGCAGGACCCGGTGGGGCAGCGGGAACTTGATCTT11.694915254237288No Hit
GCCAAGCTCAGCGCAACCTCCGGGCTTCTCGCTCTGACTCCAAAAGGGTG11.694915254237288No Hit
CCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTT11.694915254237288No Hit
AACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGCTGAAGAAA11.694915254237288No Hit
TGTGCAGGGTGTTGACCTGGTGCGGCGTGACGCCCAGCACCAGCCAGGTG11.694915254237288No Hit
GAGTACATGGGGTGTCGTAGGGCGGAGCCCGGAGCTCGGCCCCTGACGAG11.694915254237288No Hit
TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC11.694915254237288No Hit
GGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG11.694915254237288No Hit
CCAGGGCCCACAGAACAGCCATAATGCTGAAGGTCTGCGTCACGTGGATG11.694915254237288No Hit
GCTGGGACCGCCGTTCAGTCGCCAATATGCAGCTCTTTGTCCGCGCCCAG11.694915254237288No Hit
TTGCTGTCCTCCTCTGCACCATGGCTCTCTGCAACCAGTTCTCTGCATCA11.694915254237288No Hit
CCAATAGGCTACAAACTCTGGCACCCATGGCTGGTGGCTGGCATTCAACT11.694915254237288No Hit
CTCAGACCAGGAGTCCGTGGGTCTTGAGGACCTCTGTGTATTTGTCAATT11.694915254237288No Hit
GTGCCAAGCGCAGCTAGCTCAGCAGGCGGCAGCGGCGGCCTGAGCTTCAG11.694915254237288No Hit
CTGCAGCATGGGCAGAAAGTGCTCAAAGTCCAGCACCTTCACATTCATCT11.694915254237288No Hit
CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCT11.694915254237288No Hit
CTTTTCCAGCACGGGCCAGGGAACCATGGACTTTACCTCCAAGCATGCGG11.694915254237288No Hit
GGCCAGAGCAGGGTGAAGGAGCCGCGAGCGCAGCGGAAATCGGGCTCTGG11.694915254237288No Hit
GACCATGGCTAAGTTCCTTCAGGAGCACCTGGCCCCAAGGCCCAGGAGAT11.694915254237288No Hit
GTGTAAGAACGCTCATTCTACCCCCAACCCTTGTCTCCAAGGACCTCGGT11.694915254237288No Hit
GACCAGAGCCGGAGCCGTCACTCACCTCTGGATTAGCCTGAAGCGGAGAC11.694915254237288No Hit
CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCAACAACCAGCTGCT11.694915254237288No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG11.694915254237288No Hit
TCCAGGGTGCGGCCTTCCCCCTGGCAGTGTGCGGCCAGCACGCCCACCAG11.694915254237288No Hit
TGACGATGTCACCGATCTGGACGTCCCTGAAGCAGGGGGACAGGTGTACA11.694915254237288No Hit
GGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCC11.694915254237288No Hit
CCCAGAATCAGGGCCCAGATGTTCAGGCACTTGGCGGTGGAGGCATAGGC11.694915254237288No Hit
CAGAAGGCACTGGGGATTGGAGCAGTGAGGAGCCTGAGGAAGAGCAGGAG11.694915254237288No Hit
GGCGGCGGAGGCGGCGGCACCGAGGTAATCCAGGTGACTAATGTCTCCCC11.694915254237288No Hit
CTGATGATGTGCGGGTTCAGGAGGTACCCAAACTGAAGGTATGTGCACTG11.694915254237288No Hit
GGTATCAACGCAGAGTACATGGGCAGTCGCCCAACATGGCTGGAGCGCGG11.694915254237288No Hit
CCGGCGAGGGGATTGTCCCGCCGCCCGCACCTCACAGCGGCTGCCCACGG11.694915254237288No Hit
AGCACAGCCACCTCATGTTCCTCCTTGTGCATCTTCTGGCTTTGGGGAAG11.694915254237288No Hit
ACACACCTTCGAGGTGACCGGCCAGGAAACGGTCGCCCAGATCAAGGCTC11.694915254237288No Hit
ACCAAAGCCCATGTCATCATCAGACTCCTCGGATTCTTCTTTCTTTGCTT11.694915254237288No Hit
CTCTTTCTTGGGCTCTAAGGACCCAGGAGTCTGGGTGCACAGCCTCCTTC11.694915254237288No Hit
CGGCCCAGCTCCTGTGTTTTGGTCAACAGGTCACCCTGGGGGCCCTCCTG11.694915254237288No Hit
GACAATAGTGGGATGCGAGTCCAGGGCGATCTGCAGGTCCAAGATGTAGT11.694915254237288No Hit
GCTGATCAGCCATGGTGCGAGCGAAGGGAGGAAGAGCAGAGGGAGCGAGG11.694915254237288No Hit
GTAGTAGATCACAAGGCCGATCGCCGCAGCCAGCACCTCAGTGGACACCC11.694915254237288No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT11.694915254237288No Hit
CTCCTGGACCCAGGATTCACTGGGATCAGCACAGACTTGCTTGCTTCTTT11.694915254237288No Hit
TCCCTCGCCGTCCTTCGCCATCGCACGCCACCGCACCCCATCTCTCGAAA11.694915254237288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)