FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003671295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003671295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCGGGGCTGCGCGTGACGAACCACTGAGTGGCCGTTATAACGTTGCTG24.3478260869565215No Hit
CACTCGCGCATCACCCGCGGCTGCCGGTCGAGTGTCCCAGGCGCTCCGGG24.3478260869565215No Hit
CTAGAAGGCATTTCACTCACAGGGGAAATCTCACTCCCTGAAGACATCTC24.3478260869565215No Hit
GGCTGGTATGTAGGGCAAGGTTTAGATTGTATCCTAGGGGCCCTCAGAGG24.3478260869565215No Hit
GGGTGTGCCTGGCTGCTCTTCTAGGGATGTGTGGCTGTGCCAGGCCAGGC24.3478260869565215No Hit
GGCTACGGATCTCCTAGTGACAGCCCAGACGACCGCGGGAGTGTGCGGCG24.3478260869565215No Hit
CAACCCGCGCCGGGCGAGGTGGCAGCACACCCTGGGCCCCCCACTCCCCG24.3478260869565215No Hit
GTAACAACGCAGAGTACATGGGGCATGTCGGCTAACGGAGCGGTGTGGGG12.1739130434782608No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT12.1739130434782608No Hit
GTACATGGGCTCTTTCTTGGGCTCTAAGGACCCAGGAGTCTGGGTGCACA12.1739130434782608No Hit
CAGTGACATTGAAGGTGGGGGCCCCACCGGTGCTCTTGGTACGAAGATCC12.1739130434782608No Hit
TTGCTCAAAAGGGTGTACACCGCCCTTAGACGTCTTGGTATACGGACAAC12.1739130434782608No Hit
GTACATGGGCCTGCAGAGGATCAAGACAGCACGTGGACCTCGCACAGCCT12.1739130434782608No Hit
ATAGAGAATGGGGATCAGGAGTGTGGATGGTGGTATTCCCTCACCAAGAG12.1739130434782608No Hit
GGGCCTCCACCCCGCACTGGCCCAGAGTGGCCTCATCCTCCAGGGGCGCG12.1739130434782608No Hit
TATCAACGCAGAGTACATGGGTGGTGGTGGTGAACGAGAAGTACGGCATC12.1739130434782608No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG12.1739130434782608No Hit
CCCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTGCCCCACG12.1739130434782608No Hit
CCAAAGTCTGCTGCCTCCCAATTGCTAGATCCCAGATCGTCGTCTGGGGA12.1739130434782608No Hit
GTACATGGGTGGTGGTGGTGAACGAGAAGTACGGCATCCGCCTGACCGAC12.1739130434782608No Hit
ACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACC12.1739130434782608No Hit
GTCTGGGGCCAGCCACCTGGCGGGCCGCTCCGGTGCGCCTGCCCGCGCTT12.1739130434782608No Hit
ACTGAAATGTCATCCTGGGCTCGGCGCAGGAGTTCCTCAAGCCGTCGGGT12.1739130434782608No Hit
TCCCTAGACTTCACGGAGTAGGCGAATGCTATGAAGCCCAGACAGCACCA12.1739130434782608No Hit
TTCTTGCTCCTCTCAGCGGAGCTGGGGCGAGCTGGGCGTGCGGGCAGCTG12.1739130434782608No Hit
GAGAGGCGTCCAGCCCAGAGCAGGTCCCCGTGCGGGCTGAGGAAGCCAGA12.1739130434782608No Hit
TTTCTGCAGACGTCGCGCCATCGTGACCTCCCCGTCCTACACACCCGGGT12.1739130434782608No Hit
TCAACGCAGAGTACATGGGGCCCCAAAGCCAGAAGATGCACAAGGAGGAA12.1739130434782608No Hit
GCCTTTTCCTCCCTGTCGCCACCGAGGTCGCACGCGTGAGACTTCTCCGC12.1739130434782608No Hit
GACCAGAGCTGTGCAGCCCCTCAGGCTACCTAGCAACAAGGCCCAGGTGA12.1739130434782608No Hit
CACCTTCTTCTTCCTCCTCCTCTTCCTCCCCACCTTCTTCCTCTTCTTCG12.1739130434782608No Hit
TATCAACGCAGATACATGGGCATTCGTCCAGCACGGCCTGGCGTAGCGGA12.1739130434782608No Hit
CTCGGCATGCTCGATGAAGTCGCCGGCTGCTATGTCACGCTGCATCACCT12.1739130434782608No Hit
CATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTG12.1739130434782608No Hit
GTGAGCGGCTGTGATAGGGATGGGACACCAAGACCGGCCTCTACAGTGCG12.1739130434782608No Hit
ACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG12.1739130434782608No Hit
GTTTTTTGGACTATCGTCAGACAGGTCCTGTAGTCACGGCCCAGCTCCTG12.1739130434782608No Hit
TCTTCTGGCTTTGGGGAAGGAAGTGTTGAGTGAAGGTTTGATAAGTGTGG12.1739130434782608No Hit
GACACAGACTATGACCACGTCGCGGATGGTGGCCTGCAGGCTGACCCTGG12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)