FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003671296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003671296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length100
%GC62

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTCCAACACCCGCTCGTTTTGGCGGCAGCTCGTGTCCCAGAGACCGA24.3478260869565215No Hit
GTATAACGAATCCGGCCACCCATCACCCAGCCTCAGCGATGACCAACCCG24.3478260869565215No Hit
GAGCTGGTGCCCAGCATCCCCCAGAACAAGAAGGTGAGCAAGATGGAAAT24.3478260869565215No Hit
AATTCACACCGGCGCACGCCACAGGCGTCATACTTCCCAAGAAGCGGCCA24.3478260869565215No Hit
GTACTGGCTCGGGGGCCCTCCTCAGCGCCCAGGTCACTCTAGCATCCAGG24.3478260869565215No Hit
CCCCTCTGAACCCCACTCTTGCTGTCATCCCCAGCTGCCTGCCCCCCAGC24.3478260869565215No Hit
AGCCTGCTTGGCGAGCTCCGGGAGCTCAGTACAGCCCTCACCTCCCACTG24.3478260869565215No Hit
TCCAGGTCGTGGGCTTGCACACCCTCAAGGAAATCGCCGAAGACCCGTTG12.1739130434782608No Hit
CAGCAGGGGCAGAACCAGCAGCAGGGGCTGCAGAGCCTGGGGCAGCAGAG12.1739130434782608No Hit
CCCGCCCGGCTTATCCGGACTCCGGGCAGCCTCGCGTGCTTCCCGTGTCT12.1739130434782608No Hit
GTCACGTCGCCAACCATCTTCCTGTCCCTAGACTTCACGGAGTAGGCGAA12.1739130434782608No Hit
GCGCTGGCCCACGGCCGCGCTCGACACCACCTTCACGAGGTGGCCGCCGC12.1739130434782608No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT12.1739130434782608No Hit
GTATCAACGCAGAGTACATGGGAGGGTGTGAAAGGCATCTCAGCGGCTGC12.1739130434782608No Hit
CTGTCTCCCTTCTTGGGGGCCGAGGGCTTCCTGGGGAAGAGGATGAGTTT12.1739130434782608No Hit
CCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCG12.1739130434782608No Hit
TCAACGCAGAGTACATGGGAACGACAGGGGAAAGGAGGTCTCACTGAGCA12.1739130434782608No Hit
CCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGCTACAAGG12.1739130434782608No Hit
GCACGGGGCAGTGGGCGGGCAATGTAGGCAAAGCAGCAGGGTGTGGTGTC12.1739130434782608No Hit
ACGCAGAGTACATGGGGGCTGCCCCACCATGGCTACCTAGGCCCTCTTGC12.1739130434782608No Hit
GGCTGGGGGTCCAGTCCAGCCATGGCATCTTGGGAAGCAGAGGCACGGGG12.1739130434782608No Hit
CGACTCCATCTTCGCGGTAGCTGGGACCGCCGTTCAGTCGCCAATATGCA12.1739130434782608No Hit
GAGATACGGAGGCCCGGTCAGACTCTCCCTCTGCACCTCAATGGAAACGA12.1739130434782608No Hit
TCGGATCACCGGCGTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGC12.1739130434782608No Hit
GGATGGGACACCAAGACCGGCCTCTACAGTGCGGTGACATGGAGGCCCTG12.1739130434782608No Hit
GCATTGGCTGTTCCCTCAGGCTGGAATGCTTTTCCCTGATTTCCACACGG12.1739130434782608No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT12.1739130434782608No Hit
GGGAACGACAGGGGAAAGGAGGTCTCACTGAGCACCGTCCCAGCATCCGG12.1739130434782608No Hit
GGGTCCCCCACGCACAACTCAATGGTACTGTCGTAATAATGGCGTAAGTC12.1739130434782608No Hit
GGGCCCACAGAACAGCCATAATGCTGAAGGTCTGCGTCACGTGGATGTAG12.1739130434782608No Hit
TCCCCCAGTAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCTGAATCAGT12.1739130434782608No Hit
GTACATGGGGAGGGGCTCTGCGTTCTGTAGTGGCGCTGCTTGGGCCCTTG12.1739130434782608No Hit
AGGTGGCCCCGGATGCTGCGGCGCCCGCTGGCCGGGCTGGCTGCGGCCGC12.1739130434782608No Hit
GTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCT12.1739130434782608No Hit
ATCCTGCTGCACCCCGAGGAACTGGTAGAAGTTGAGCTGCACCTCCTCCA12.1739130434782608No Hit
TTTTTCCCCTGTGCCTGGGCAGGCAGCGTGTGCAGGGTGTTGACCTGGTG12.1739130434782608No Hit
GGACACAGACTATGACCACGTCGCGGATGGTGGCCTGCAGGCTGACCCTG12.1739130434782608No Hit
GGGCAGCGTCTGAGGAAGTTTGCTGCGGTTTCGCCTTGACCGCGGGAAGG12.1739130434782608No Hit
CCTCCAGCGTCTTCTTGGCCGCAGCGGCGAAGCAGCTCCGCAGGGCCTCG12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)