FastQCFastQC Report
Tue 10 May 2022
EGAF00003671652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003671652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences728321
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTACACCGCCCAGATCGGAGCGGACATCGCCCTGCTGGAGCTGGAGG11450.15721090013881242No Hit
GGCCCATACTGGATGCACTTCTGCGGGGGCTCCCTCATCCACCCCCAGTG8950.12288537609103677No Hit
GTACATGGGAGAAGGAACAGGGAGCGGCCAGGATGCTGAATCTGCTGCTG8060.11066548953002865No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG7940.10901786437573543No Hit
GTGTAGAACTGTGGGTGCACGATGATCCTGCTGACCGGCAGCAGCTGGTC7830.10750754131763329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)