FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003671907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003671907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAAGCACTTTGAATGAAATGCTATCTTCATTAAAAAGCAAGGTAGATA315.0No Hit
GTGGAAGTATTCATGACTACATAAGCCTAAGAAACGTTGATAGTCTTCAG210.0No Hit
AAATTTGAAGATCCTGTATCGATACTCAACCTACTGAAAAAATCAATGTA210.0No Hit
CCTCCAATGCTGAGGATTACAATTCAACATGAGATTTGGGTGGGGACACA210.0No Hit
TTTCTACGCTTTCCGGCTGCTCCGCGGCTTCGGTTGGCAGACCGGGCACA210.0No Hit
AAACGTGAGTGTGTATCAACCTGTTGTTGAATCACTTTATGTGCATTTTG15.0No Hit
ATTTTCGGGTGCATATATTTGTGTATGTTCGACTCCTATTTTTCTTGTGT15.0No Hit
AGCCAATCCTGATATCGTATTTGTCGACATTATGATGCCACGACTAGATG15.0No Hit
GATTATATCGGAACATTTTATTTTGGTTTGACTTGTGTCAGTCAGTCCAT15.0No Hit
ACATGAACATCGCCACTCACGCATTGCAAGTGTCAGGTTTTGGTTTAATT15.0No Hit
TTAGCGGTGTGTGGTGCCAAAGCGTATGAGGCTGACGACATTATTCAGTT15.0No Hit
GTTCAACATGGGAGGAAAGCCTCTGATTCCAAAGCAACCGCCCGGACGGG15.0No Hit
GACATGCACATTGTGCAAGATGAAATCTTTGGTCCGGTCATGAGCATTTT15.0No Hit
CTCCTATATTTGAGGTTTCTGACTTTCGTTCGAAGCTTGGCTTAAGTTCA15.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)