FastQCFastQC Report
Tue 10 May 2022
EGAF00003672050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79365
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2900.3654003654003654No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1390.17514017514017516No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1340.16884016884016884No Hit
GTTCTCTTCTCTGCAGGGCGAGGGGCAGGGAGCTAGTAGAACCTCGCAAT910.11466011466011465No Hit
CATCCAAGCTTAAGACGGTGAGGTCAGCTTCACATTCTCAGGAACTCTCC850.10710010710010709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)