FastQCFastQC Report
Tue 7 May 2024
EGAF00003672070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45704
Total Bases4.5 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT880.1925433222475057No Hit
GTATCAACGCAGAGTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCG570.12471556100122527No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC560.12252756870295817No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT530.11596359180815685No Hit
GTACATGGGAAAGCGATCTCTTCTGAGGATCCGGCAAGATGGCAGAAGTA500.1093996149133555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)