FastQCFastQC Report
Tue 10 May 2022
EGAF00003672071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45476
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT820.18031489137127274No Hit
TATTTATAGAGTCTGGTGAACTTGAACTAGAGAAAGCTGCAAAAAGTGGT730.1605242325622306No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC680.14952942211276277No Hit
GTACATGGGTGACAGAGGACCCAGATCTTCAGGTTTCTGCGATGCAGCAC570.1253408391239335No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG460.10115225613510424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)