FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4513
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT200.44316419233325943No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT150.3323731442499446No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA130.28805672501661866No Hit
GTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCCCTGCTGTCAT120.2658985153999557No Hit
CCCGTTAGCAGGGGCGTCTCTTCCATTTTCTGCCTCTTCCACAACTTCCT100.22158209616662972No Hit
GAAGGGGGGTCACCCAAGTCTCCCTGCTGTCATTTCAGGAGGCCGACCCA100.22158209616662972No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT90.1994238865499668No Hit
CCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACCGCTCCAAGCC80.17726567693330378No Hit
GTATCAACGCAGAGTACATGGGACTGGCTGCTCTGAAAAGCCATCTTTGC80.17726567693330378No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG80.17726567693330378No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA70.15510746731664082No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.15510746731664082No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG70.15510746731664082No Hit
CCCAGGAAGCCGTGTCAGCGGCCGGAGCGGCAGCTCAGCAAGTGGTGGAC70.15510746731664082No Hit
GTGCTGGTGAATGTGAGTACAGGGAAGCAGCGGCCGCCATTTCAGGGAGC60.13294925769997784No Hit
AGGTGAAGAAGCCCGCCATCGCGAAGCTGCCGATGAACACCAGCCCGAGG60.13294925769997784No Hit
GACCTGAAGCAACAGGTGGAGGGGACCGCCCAGGAAGCCGTGTCAGCGGC60.13294925769997784No Hit
TCCCCAGGAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGCTGAAGAA60.13294925769997784No Hit
CTGAAAAGCCATCTTTGCATTGTTCCTCATCCGCCTCCTTGCTCGCCGCA60.13294925769997784No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.13294925769997784No Hit
GACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGT60.13294925769997784No Hit
CCTAAAAATAGTGCAGTGGCGCGATCTCAGCTCACTGCAAACCTCCGCTT50.11079104808331486No Hit
GCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGT50.11079104808331486No Hit
GCACAGAGTGAGACTCTGACTCAAAAAAAAAAAGAAACATGGAGGCCAGG50.11079104808331486No Hit
GAACAGCCCCTGCTGGCAAGTCAAGTGGCAACTCCGTCAGCTCGTTAGAA50.11079104808331486No Hit
GCCGTAGACACCAGCTCCGAAATCACCACCAAGGACTTAAAGGAGAAGAA50.11079104808331486No Hit
TTGCAGATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAGCAGGA50.11079104808331486No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA50.11079104808331486No Hit
GTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGCCGCGCGCCTC50.11079104808331486No Hit
AAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCTGGGAGCGGGGCTGT50.11079104808331486No Hit
GTATCAACGCAGAGTACATGGGGAGCGCCCTCCCCGTCGTTTTCCGTGAG50.11079104808331486No Hit
GGGCCAGGCTGTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCC50.11079104808331486No Hit
TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA50.11079104808331486No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA50.11079104808331486No Hit
TTACAAAACCGGCTATTCGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGC50.11079104808331486No Hit
GTCTCCATCTTCCCTATTTATTTTCAGCCCTTGAGGGCTTCATTGTAGAT50.11079104808331486No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA50.11079104808331486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)