FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4526
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT180.3977021652673442No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT130.28722934158197083No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA100.22094564737074682No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG90.1988510826336721No Hit
GTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCCCTGCTGTCAT90.1988510826336721No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG80.17675651789659744No Hit
GTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACCC80.17675651789659744No Hit
TCTTTGCATTGTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGC80.17675651789659744No Hit
CTTCCTCACCATCACCTTCTTCTTCCTCCTCCTCTTCCTCCCCACCTTCT70.15466195315952277No Hit
GTACATGGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC60.13256738842244808No Hit
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAA60.13256738842244808No Hit
GTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCG60.13256738842244808No Hit
CCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGT60.13256738842244808No Hit
ATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAA60.13256738842244808No Hit
CTGAAAAGCCATCTTTGCATTGTTCCTCATCCGCCTCCTTGCTCGCCGCA60.13256738842244808No Hit
GGTATCAACGCAGAGTACATGGGGAAGGGCGGCCGGTGCAGCCGCAGCTG60.13256738842244808No Hit
GTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGCCGCGCGCCTC60.13256738842244808No Hit
CCACCAGCACCGTGTGGACCTGCGGGTCCGAAAGGAACTTGCGCATCTGC60.13256738842244808No Hit
CTCTTTGAGCGTGGAGCGCTCCACCAGCACCGTGTGGACCTGCGGGTCCG60.13256738842244808No Hit
AACCTGGAGAGTGCCTTCGAGTGCGAGGCGAGGTGGCTCCTGACGCTAAG60.13256738842244808No Hit
CTCCTGGAAGGTCCCGAGCGCGACACCATGTCGGAGCCCGGGGGCGGCGG60.13256738842244808No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG60.13256738842244808No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG60.13256738842244808No Hit
GATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGG60.13256738842244808No Hit
GCCCGTAGCTGACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCAC50.11047282368537341No Hit
CTCCACAGATACCCCGAAGCCATGGCAAGCAAGGGCTTGCAGGACCTGAA50.11047282368537341No Hit
GCCATGGCATGCCCCCTGGATCAGGCCATTGGCCTCCTCGTGGCCATCTT50.11047282368537341No Hit
TTTCTGTCTCTTGCTGGCTGTCTCGCTGAGTCGCGGCCGCCTTCTCATCG50.11047282368537341No Hit
GTCCGCGCCGCGCCTCGGCAGCCGGAACAGGGCCGCCGTCGGGGAGCCCC50.11047282368537341No Hit
CTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGAT50.11047282368537341No Hit
GTACATGGGGAGAGCTCGCCACTCCTTAGTCGAGGCAAGACGTGCGCCCG50.11047282368537341No Hit
TTTTAATCCCCTGCATCGGATCACCGGCGTGCCCCACCATGTCAGACGCA50.11047282368537341No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC50.11047282368537341No Hit
TTTCGGGTGCTGGCGGCTGCAGCCGGAGTTCAAACCTAAGCAGCTGGAAG50.11047282368537341No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)