FastQCFastQC Report
Tue 10 May 2022
EGAF00003672169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17405
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATGATCTGTCCCTGCTCCAATTTGTAAAAAACGCAAGATTCATCAGA440.25280091927607007No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA380.21832806664751508No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA360.20683711577133007No Hit
GCTATGCATTGCATGGCATCCGCTACAAGAACGACCATATCAACCTGGCC350.2010916403332376No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG310.17810973858086757No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA280.16087331226659007No Hit
GTACATGGGGTCGTGACCCACGAAATGGCGTTCGCGCATGCGGTGGCCGA260.14938236139040506No Hit
ATTTTATTGAGTGGAAAGCTTACAAAAGGTCCACTGGCCCCTTCCCTCCC260.14938236139040506No Hit
GTACATGGGAAGGGATCAACCTTTCCCGGCAAGGCGGAGGAATTGGGGCA250.14363688595231255No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG240.13789141051422005No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC240.13789141051422005No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG230.13214593507612757No Hit
TAACAGTTCTTGGCGCAAATAGCGCTGAATCGCTTCTTTAAAGGCTGCAG220.12640045963803503No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT220.12640045963803503No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT210.12065498419994254No Hit
GTACATGGGAACCTGGGAAGGAATTCAGGCTGGAAAGGAGCTCGAGGAGC210.12065498419994254No Hit
TCTTTAAAGGCTGCAGCGTCGTCCTCAAATTTCGCACTGACCATAATGTG210.12065498419994254No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG200.11490950876185005No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA190.10916403332375754No Hit
TATCAACGCAGAGTACATGGGAACAGCTATGCATTGCATGGCATCCGCTA190.10916403332375754No Hit
GTACATGGGAGTCACCGCGTTTAAAATGAACCTGCCGGCTGATCGTTTTT180.10341855788566504No Hit
GTACATGGGGGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTC180.10341855788566504No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT180.10341855788566504No Hit
AGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCGCT180.10341855788566504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)