FastQCFastQC Report
Tue 10 May 2022
EGAF00003672170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17405
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG310.17810973858086757No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA280.16087331226659007No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA280.16087331226659007No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT270.15512783682849757No Hit
CATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTATCTCGGCAATA260.14938236139040506No Hit
TCTATGATCTGTCCCTGCTCCAATTTGTAAAAAACGCAAGATTCATCAGA250.14363688595231255No Hit
GCTATGCATTGCATGGCATCCGCTACAAGAACGACCATATCAACCTGGCC240.13789141051422005No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT240.13789141051422005No Hit
ATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTT230.13214593507612757No Hit
GTACATGGGGTCGTGACCCACGAAATGGCGTTCGCGCATGCGGTGGCCGA220.12640045963803503No Hit
AAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGGATGAGTCCCTCAG220.12640045963803503No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT220.12640045963803503No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA220.12640045963803503No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT210.12065498419994254No Hit
GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTT210.12065498419994254No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA210.12065498419994254No Hit
GTACATGGGCCGCGGCAAGAATGCCGCCATGCTGATCCTCCGACACGCCG200.11490950876185005No Hit
ATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAA190.10916403332375754No Hit
GTATATAACCACATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTA180.10341855788566504No Hit
GTACATGGGATAGAAGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGTG180.10341855788566504No Hit
GTACATGGGAACCTGGGAAGGAATTCAGGCTGGAAAGGAGCTCGAGGAGC180.10341855788566504No Hit
AGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCGCT180.10341855788566504No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT180.10341855788566504No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA180.10341855788566504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)