FastQCFastQC Report
Tue 10 May 2022
EGAF00003672172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17295
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATGATCTGTCCCTGCTCCAATTTGTAAAAAACGCAAGATTCATCAGA460.265972824515756No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA390.22549869904596706No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG360.20815264527320035No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA280.16189650187915583No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA270.15611448395490027No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG250.14455044810638912No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT250.14455044810638912No Hit
GTACATGGGGTCGTGACCCACGAAATGGCGTTCGCGCATGCGGTGGCCGA240.13876843018213356No Hit
ATTTTATTGAGTGGAAAGCTTACAAAAGGTCCACTGGCCCCTTCCCTCCC220.12720439433362243No Hit
ATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGGCCGAT220.12720439433362243No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT210.12142237640936687No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT200.11564035848511131No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG200.11564035848511131No Hit
TCTTTAAAGGCTGCAGCGTCGTCCTCAAATTTCGCACTGACCATAATGTG200.11564035848511131No Hit
CGTTAACAGTTCTTGGCGCAAATAGCGCTGAATCGCTTCTTTAAAGGCTG200.11564035848511131No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC190.10985834056085574No Hit
GCTATGCATTGCATGGCATCCGCTACAAGAACGACCATATCAACCTGGCC190.10985834056085574No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC190.10985834056085574No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG180.10407632263660017No Hit
GTATATAACCACATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTA180.10407632263660017No Hit
GTACATGGGAAGGGATCAACCTTTCCCGGCAAGGCGGAGGAATTGGGGCA180.10407632263660017No Hit
AATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATT180.10407632263660017No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT180.10407632263660017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)