FastQCFastQC Report
Tue 10 May 2022
EGAF00003672263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44989
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA6491.4425748516303987No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT4961.1024917201982707No Hit
GTACATGGGAACCCCCACCGGACCTACAACCCGCAGTCCCACATCATCTC1370.30451888239347397No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG1180.26228633666007245No Hit
CTCATAGACAGACCAAGAAATGGCGGTGGAGGGCATCTGGTAGATGACAC910.20227166640734404No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT820.1822667763231012No Hit
GTACATGGGCATCGGCACTGCCATCGGGCAGATATTCTTTCAGGATAACT770.17115294849852186No Hit
GTACATGGGTGGCCGTCAGCATCCCGATCATCAAGGCGCTGCGCGAAGGC710.15781635510902667No Hit
GTACATGGGGATGACTGTCCCCCGGGGAAGACCGAGAAGATCGACGACCT690.1533708239791949No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC690.1533708239791949No Hit
GTCTATGAGTTCTTCAAGTACTTTCTCACCAAGCGCCAGCTGGAAAATCG630.14003423058969972No Hit
GTACATGGAACCGCCGTCGCGCCATCCGCGATTTCGACAGAACCGCGGTC620.13781146502478384No Hit
GTACATGGGCGGGCACGGAGAACATCTACAAGATCTACGGCGAGAGCTTC620.13781146502478384No Hit
GTATCAACGCAGAGTACATGGGAACCCCCACCGGACCTACAACCCGCAGT600.1333659338949521No Hit
GTTTTCAGTCACTGCAAATTTTCTTCCCTCCTCTGGGATCTAAGGATCCA600.1333659338949521No Hit
GTACATGGGGGATCGCGGTGCTGCTGATGTCGGGCTTCTCGTCGGAACTG570.1266976372002045No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA560.12447487163528863No Hit
GTACATGGGGCGCAGCGACGGGCGCGGAGGTCCGGCCGGGCGCGCGCGCC540.1200293405054569No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT520.11558380937562514No Hit
GTACATGGGCAGCGGCGTCGGACTCCACGAGCTTGCGCAGGCGCGAGATC510.11336104381070929No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG510.11336104381070929No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA470.10446998155104581No Hit
GTACATGGGGCGCCGCTGGCCCTGTTGCCCGAGAAGGCCAACGAGCAGCA470.10446998155104581No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT470.10446998155104581No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC470.10446998155104581No Hit
GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTT450.10002445042121408No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG450.10002445042121408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)