FastQCFastQC Report
Tue 10 May 2022
EGAF00003672265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44387
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA6871.5477504674792169No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT5141.1579967107486426No Hit
GTACATGGGAACCCCCACCGGACCTACAACCCGCAGTCCCACATCATCTC1040.23430283641606778No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG860.19375042242097912No Hit
CTCATAGACAGACCAAGAAATGGCGGTGGAGGGCATCTGGTAGATGACAC830.186991686755131No Hit
GTCTATGAGTTCTTCAAGTACTTTCTCACCAAGCGCCAGCTGGAAAATCG780.17572712731205084No Hit
GTACATGGGTGGCCGTCAGCATCCCGATCATCAAGGCGCTGCGCGAAGGC780.17572712731205084No Hit
GTACATGGGCATCGGCACTGCCATCGGGCAGATATTCTTTCAGGATAACT690.1554509203145065No Hit
GTACATGGAACCGCCGTCGCGCCATCCGCGATTTCGACAGAACCGCGGTC680.15319800842589046No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG660.14869218464865838No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC620.13968053709419423No Hit
GTACATGGGCGGGCACGGAGAACATCTACAAGATCTACGGCGAGAGCTTC590.13292180142834614No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT590.13292180142834614No Hit
CCTCTGGGATCTAAGGATCCAGGGAGGAGGCTGCCACAGTGAAGCAGAAA570.12841597765111407No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA520.11715141820803389No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT520.11715141820803389No Hit
CCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT510.11489850631941785No Hit
GTTTTCAGTCACTGCAAATTTTCTTCCCTCCTCTGGGATCTAAGGATCCA510.11489850631941785No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG490.11039268254218577No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA480.10813977065356974No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA470.1058868587649537No Hit
GTACATGGGGCGCAGCGACGGGCGCGGAGGTCCGGCCGGGCGCGCGCGCC460.10363394687633767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)