FastQCFastQC Report
Tue 10 May 2022
EGAF00003672266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44387
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA6561.4779101989321197No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT5441.2255840674071237No Hit
GTACATGGGAACCCCCACCGGACCTACAACCCGCAGTCCCACATCATCTC1210.2726023385225404No Hit
GTACATGGGTGGCCGTCAGCATCCCGATCATCAAGGCGCTGCGCGAAGGC940.2117737175299074No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG900.20276206997544327No Hit
GTCTATGAGTTCTTCAAGTACTTTCTCACCAAGCGCCAGCTGGAAAATCG840.18924459864374704No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC790.17798003920066688No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT710.15995674409173857No Hit
CTCATAGACAGACCAAGAAATGGCGGTGGAGGGCATCTGGTAGATGACAC690.1554509203145065No Hit
GTACATGGGGATGACTGTCCCCCGGGGAAGACCGAGAAGATCGACGACCT610.13742762520557822No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT600.13517471331696218No Hit
GTACATGGGGGATCGCGGTGCTGCTGATGTCGGGCTTCTCGTCGGAACTG590.13292180142834614No Hit
GTACATGGGCGGGCACGGAGAACATCTACAAGATCTACGGCGAGAGCTTC560.12616306576249803No Hit
GTACATGGGCATCGGCACTGCCATCGGGCAGATATTCTTTCAGGATAACT520.11715141820803389No Hit
GTACATGGGGCGCAGCGACGGGCGCGGAGGTCCGGCCGGGCGCGCGCGCC510.11489850631941785No Hit
GTATCAACGCAGAGTACATGGGAACCCCCACCGGACCTACAACCCGCAGT500.1126455944308018No Hit
GTACATGGAACCGCCGTCGCGCCATCCGCGATTTCGACAGAACCGCGGTC480.10813977065356974No Hit
GTCCCACATCATCTCAGGCGGGCTGGCCGGGGCCCTCGCCGCGGCCGCCA480.10813977065356974No Hit
CTCTAAGGCATTGGGGAGCAGAGGGCCCATAGGCAGCACCCTGCAAAAAA470.1058868587649537No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA470.1058868587649537No Hit
GTTTTCAGTCACTGCAAATTTTCTTCCCTCCTCTGGGATCTAAGGATCCA470.1058868587649537No Hit
GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTT460.10363394687633767No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT460.10363394687633767No Hit
GTACATGGGTGTCAATGTGCGACCTGCCGAGGGTAGGGGGGCGGGTGGTC450.10138103498772164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)