FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53
Sequences flagged as poor quality0
Sequence length100
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCGGTGTCACAACCGATGCAGGCTCCCCACTTGGCACCCGTCAT35.660377358490567No Hit
TCTCTGCAGGTGCCTGCCAGCATCCGCGCTGATTGTTGTATCTGCTCCCT23.7735849056603774No Hit
GTGTTATCTGGATCTGCAGAACAACCTGGTCGGGCTGCAGACCAACCGGG23.7735849056603774No Hit
TCTTCGCCGTGGCCCGCGTCACCGGTGGCGAGGCGTGAGCGGGCCGTGCC23.7735849056603774No Hit
CTTTCGACCAGAGCGATGCGGTCCAGGGAAGCGAGGTCGGCTAGTCGGGC23.7735849056603774No Hit
AACTGATGGAGCCGATGGAGGCGGTGTATGCCATCGCGGATCACTGCCGG23.7735849056603774No Hit
CTACTGGGGCCTCGACCCCGAGGATTTCCGCGATGATCCCCTCGCCACCC23.7735849056603774No Hit
AGGCCGTACAGACGGTGCCGGGAATGCTCGATCATCGTGAGCCCGAGGGC11.8867924528301887No Hit
TGTACGATGTGAACCTCCGCGTATGATGCTCCGCAGCGTTACTATATCAC11.8867924528301887No Hit
GTATCACAACTCTCGGGTGAGCGGGTGGTCACATGCCCCAGCCGCTGTGA11.8867924528301887No Hit
AACGTCTGGGGCTCGACGGGATGGTCGATCAACGCGTTGAAGTGGCACAC11.8867924528301887No Hit
GCGTCCGGCCGCGCCAGTGGCTGACCAGCCGCAGCGCCCCGTGCAGCGCG11.8867924528301887No Hit
ATATTGACTTCGCCATTGAAGTGGAGCGCTCGCTGCGCGTTCTGGACGGC11.8867924528301887No Hit
CGTTAACCACCATCAAACAGGATTTTCGCCTGCTGGGGCAAACCAGCGTG11.8867924528301887No Hit
CTGTGTGACAACCGTCCGCGGGGACGGCACCCGTCGCCCCTTTCTTTGAG11.8867924528301887No Hit
CTCCATGTACGACGTCATCGCGCGCCGTCTCGAGAAGCACCTGCACCCGC11.8867924528301887No Hit
CTATTACTTCTGAGGCCGTCGTGGGATCCGAGCTGACATCGCGGGTGCGG11.8867924528301887No Hit
GGGTAACGATGCCGTAGCGACCAGCGCCCTGGCGGGTGCGGGCTGCCATA11.8867924528301887No Hit
GATTGAGACAGCACTCCACTCCATGCTAAGACTGTTTACGTTCCAGCCTG11.8867924528301887No Hit
GGGTTGTCCACCGACGGGTACGCGTGCGCCCAGCGGTGCGTACGCCGGTC11.8867924528301887No Hit
CTGCTGCTGCTGCTGTGATGATTGCGGATACCCGCGCTGCTGCTGCGGAG11.8867924528301887No Hit
GCCCGGCAACAGCCCCAACAAGTTCACGGAGGGTCAATCCCCGCATACGC11.8867924528301887No Hit
GAGCGACGGCGAGTGGCGCGACGACGCTGGGAGGTACCCCGCTCTGCCTC11.8867924528301887No Hit
GAATTATTGGTGGACGGCTTTACCACGTCATTACCGACCATCAGCTGTAC11.8867924528301887No Hit
CACGACGGGCAGCCAGCAGGCACTCGACCTCGTCACGGAGCTCTTCGTGA11.8867924528301887No Hit
GGATAGTGTTGCTTTTCCCGGAAAATGGTAGTCGTGACTAATTCCAGCCC11.8867924528301887No Hit
ATTCTCTCCATCATGTATCTAACGATCTTCTTTCTGCTACGAATCCCAAG11.8867924528301887No Hit
GGCGGTTACCGTGCCCGCGTCGGCCAGCGTGGTGGTGGGCTGGTGGGCGG11.8867924528301887No Hit
GGGCTATGTCTCCCACCTGGTGCGCACCCAGCAGACCTACGCCGAATTCG11.8867924528301887No Hit
AGCCTCAACAGCCTCATACACGGGTATACATACACGGGTATACATACACG11.8867924528301887No Hit
CTTCCTCGGTGATGGTAGCCTCGTTTTCCATCTCGATCTCTTCGGAGAGG11.8867924528301887No Hit
TTGGTGGCGTTGTCATCGACCACGAGGGCGCGCAGCCGGGCGAAATCCGG11.8867924528301887No Hit
AGCCGATGTGGGCGCCCACGGCCACGCCCTCGGCGGCGGCGGTGCGCACG11.8867924528301887No Hit
CTGGAGGACCTCTGGGCCTTCAACGACGAGCGCGTCGCACGCGCGGTGGT11.8867924528301887No Hit
ACATCGGCGCGTGCGCTGATTTCGCCATTCACCCGGGGAAGCGCACCCTC11.8867924528301887No Hit
GGCCGAGGTGCGCGACCAGGCCGGCCGCGCCAACCGCGAGATCACCGACG11.8867924528301887No Hit
CCTCCTGGGAGCGCTTCAAGTACGGGGGCCGTCCCTCCTCGCAGCAGCTC11.8867924528301887No Hit
GCGACGAAGTCGGCCACCAAGGCAGCCACGAAGAAGACGACGGCGAAGTC11.8867924528301887No Hit
CCGCACCTCGGTGCGCACGCTGCTGTCGGCGCGCTACCTGCCGGGGCCGT11.8867924528301887No Hit
TGCCGACGATGATGGCTGTGACGATAGCGGCAAGATTGCCTGCCACAGCT11.8867924528301887No Hit
TTGTTGAGGACCGGCTTGTCAGAGTAGTAGAAATCCAAATCCTTGATCTC11.8867924528301887No Hit
GACAAAGACAGAGCTTCGTCGGTCGCGCTCGCGGCCGCGGCTAGCACGGC11.8867924528301887No Hit
GAGGGGTGCCCCAATGCCGCTGGCCCCGTCAGATGGAGGGCAATCGGGTC11.8867924528301887No Hit
AGCCGGGACAGCCGATGCCGGACTGGGTGATGCGGGCCGACACGCTCGAG11.8867924528301887No Hit
GCCTTTGGGTTCTGGAGCTGGGTGGGCGGCCGCTACTCGGTGGATTCCGC11.8867924528301887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)