FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85
Sequences flagged as poor quality0
Sequence length100
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCTTTGATTGCAGTTGAACACTACTGAGTGTTCCTGAGCATCTGAAA33.5294117647058822No Hit
CGCTCCTTACTGGCGAGTGCGGCGGCTTCCTGCTCAGGCGTGAGCGGATA33.5294117647058822No Hit
CAGGGGGCGCGCGCCGGGCATTCCCGCGCTGGCGTTGATCAACCCGAGGA22.3529411764705883No Hit
CCCTGGGTGTGGCGCGCAGCGCCACCGAGGCAGACATCAAGAAAGCGTAT22.3529411764705883No Hit
CTTCAGGGAGCTCCACGTCGTACCTGATAGGTATCGCCACAGCGACGCAT22.3529411764705883No Hit
GTCCAAGTAAGTGGGGATACTTCCGTTTTCGGCACAATTTGTCAATTTAC22.3529411764705883No Hit
TCGGTGCTCCCCCACGCCCTCGCCGTGCACGACGCGGCGGTCGCCGGTGA22.3529411764705883No Hit
GCACCCGCCGCCTCTTTATGCGAGCATTCTGCCGCCGCCATGCCGATCAG22.3529411764705883No Hit
TCGGGGCCGCACCCACGACTCGTGGGCTGCCCCAGTGACCCTCGACGACA22.3529411764705883No Hit
AGTCGATACCAATCGTAGTAATGAACGACGGCGTCCACGAGTCGTCGCAG22.3529411764705883No Hit
ATCTGGACGGCAGCGCCGGGCTGAACACGCTGCACGCCGTCAGCGATCGC22.3529411764705883No Hit
ATGCGCACGCTGCCGTCGGAGATCCTGCTTGATTTTAACCTTGCCGATAA22.3529411764705883No Hit
GCGCAACCCCGACTCACGGGGCGCACATCAAGAGGTGGCCGCATTGCGGG22.3529411764705883No Hit
GTGAAGGTCAACCCCATGGAAACGATCATGGACGCAGCCTTCAAAGCCCG22.3529411764705883No Hit
CCTCAGACAGCAGCAACAGCAGGTGCAGGTGCAGTCTCAGCGGGAGGAGC22.3529411764705883No Hit
CCATGGTGGTGGATTTACCCGCACCGTTACCGCCGGAGAGCGTTGTCACC22.3529411764705883No Hit
TTCTGGTGGAGAGAGCACACAAGGGGAGAACGGAGGGGCTATGCCACGCA22.3529411764705883No Hit
AACGCGGCAAGGTCTTTTGATGCGCCCCGCAGGATGCGCAGGCTATACCT22.3529411764705883No Hit
CGCCGAGGGCGGCTGGCAGCGCTGGCCGCTGGCACTGCCGCTGGCCGGCG11.1764705882352942No Hit
GCCTGATACATGAAGAAAGCAACCTCAGTACCTGATGTCAGTCTGAGCTG11.1764705882352942No Hit
CGTCAAACCCTCGGCAGTAGGCGCCCCATGAATGGTATCCCTTCAACATC11.1764705882352942No Hit
GCAGGGCACCGCCGGTATACACGGCCATATCCATTGTACCACCACCAATA11.1764705882352942No Hit
CTTTTTCATGAAGCCCGCACGACGCAGGCGGCAACCCTTGTTTTCTCGCT11.1764705882352942No Hit
TCTGCCGACAGGCCGCCTTCCGGGCCAATCAGCAGGCGTACACGCTCAAC11.1764705882352942No Hit
GGTAGAGACGACGCTCTCGAGACGAAACGGCACGTTTACGGGCCAGGCCA11.1764705882352942No Hit
TTGATATTCAGCTGCGCCAGCGTGATCGGCAATCCAACGCTGTGGCAAAG11.1764705882352942No Hit
GCCGAACTGCTCGCGCTGGCCGACATGCGCACCCGCATCGACGCCTCCCG11.1764705882352942No Hit
TCTTTTTACCGGCGACGGTGCGGCGCGGCCCCTTGCTGGTGCGGGCGTTC11.1764705882352942No Hit
CCCCTGACCATCCTGCAAAACATCCAGGAGACGACCGTCACCATCGTGCA11.1764705882352942No Hit
GTCGTGGACTATAACGATACGATGATCTTCTTTATGTACCGCCATCTGTT11.1764705882352942No Hit
CCGATCAGCTCCTCCAGGTAGACCACCGAACTCGGCGTCGGCTGCTCGGT11.1764705882352942No Hit
CTCAAGGTCGGCGTAGGTGACCGATTCCTCGAGGCTGTGCCCGGCGACCC11.1764705882352942No Hit
GTGGACACCATCTACCTCAACAGGTTCATCGCCCTCGTACGGCCTACCGC11.1764705882352942No Hit
CCCTCGCCTGCGGCCACGCGGCGCAGGTGCTCGTCGATCAGCCGGGTCTT11.1764705882352942No Hit
TGCAGGAACTGGGTGGTGGTGAAGCCGTTCCGCTGGAAGGCCGCGAAGAA11.1764705882352942No Hit
ACTGCAGCCGCGGGTCGCGGCCCAGCACGGTCGGCACGACCGGAAGGGAG11.1764705882352942No Hit
TGGCCAGCTCGATCAACGGGATGAAGCGGCGCACGCTCACCTGCTGTATG11.1764705882352942No Hit
GTCGGGGCCGAGTCGACGAAGCTCCTCACCGATGAGCATCTGTACCTCAC11.1764705882352942No Hit
CGCAAACTGTGCGCAGTAGCCGCACTGGTAGTCCGCGTACTCGATCAGGA11.1764705882352942No Hit
GACGGGCACCGGTCAGTTGTTCCAGCTCGTTAAGCGTTTTTGAGAGAGCA11.1764705882352942No Hit
GGAATTTGCTTTTCACGAAGTCGCCAATCGCCTGGCCGCCTTTGTAGTTA11.1764705882352942No Hit
GAAATGGGGGCTGTCACTCACAGGTCAATTCTCCAATGTGATCGTCAGTG11.1764705882352942No Hit
GGCCTGATCCAGCTCGTCCAGCACGTTCCACAGGGTGTGGATGGCACGTT11.1764705882352942No Hit
CGTCGACCTCCCACGGGCCGTTGACGATGGTCGTGTTCTCCGGCGCATGC11.1764705882352942No Hit
TCGACGTACAGCTCCATGTCGAAATCAGCGGGGAGGAGTCGCTCTGTCTC11.1764705882352942No Hit
GGGCGAGGCGATCCGCCATGCGCTTGGCGGCCTTGGACACAAGGGTGTCT11.1764705882352942No Hit
TTTCTAGGCTGTTCAGTCCACTAGAGGATGACTGCATTCGCTCGAGGAAG11.1764705882352942No Hit
GAACGATGCGCCCGCATGCCGCCCAGCATGCCCTTGTCGGGCCGCCGCAC11.1764705882352942No Hit
CGCTGGGCAAGGACGAGCTGGTACGCAAAACCAACCTTGTGGGGCTGCTG11.1764705882352942No Hit
CGACCAGCGTTGCGAACCGCAGGTTTCCTGGAGTTCTGCCGCGACGACGT11.1764705882352942No Hit
ATGCTGCGCCAGTCAGGCTTCAGCTTTGCGATGGCGAATGCCAGACCGCA11.1764705882352942No Hit
ACCAGGAAGGACGGGTGAGGTGGCAGGTCGAGACGCATCAGGAAGCACCA11.1764705882352942No Hit
GCAGATAATAGACCGTCAGCCCTTTAAGGAAGGAGGCCGCGGCCTGTTCA11.1764705882352942No Hit
ATAAGAAAGAACGTCATTATTACCAATCCATAATGTATAGAAACTTGGTT11.1764705882352942No Hit
GATAGGCCACGGGGTCGATCGCGTGTTCCGCCATCAGCCCCGCCAGCGTG11.1764705882352942No Hit
GTCGCAGCCAGCAAAACTCCCACCACGGCGGCACCGAGACACTGGCCGAA11.1764705882352942No Hit
TCGCCACCTAGATTAATGTCAGGAACGGCCTTAATGTTCTGGCGCGCGTT11.1764705882352942No Hit
ATCTGCGCCCTCTCGGATCCTGCGGTGACAGACTCTGCGACCGGCTACAT11.1764705882352942No Hit
GCCATTGAACAGATGGAAATTGAACTGGGGCGCCTGACGGAAGAACTGAC11.1764705882352942No Hit
CGTCTGCCCTGGATAAAACAGGCGAGTGTAAGAAAGCAATGGCCTGATGA11.1764705882352942No Hit
GTGGAATATCGGTTCGGTCTGGTACTCCCATGAGCAGCTCTCCAGCGGCA11.1764705882352942No Hit
GTTCGGTTCGATCAAGGTCACCTCGATCGAGGGGTCGTAGCGGCGCAAGT11.1764705882352942No Hit
GTCATTAATGCTGCCGGTTCGATGCCTGGCGACTTGCAGTGTCTGTGGCG11.1764705882352942No Hit
GTCTTAACCTGCCTCAGCAGCTTCAGCGTATTGTCGAAACCGACAAGAGC11.1764705882352942No Hit
GTTGGAGGCGCTGGTGCCGTTGAGGATGTTAAACCCGGAGACCTGAATCA11.1764705882352942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)