FastQCFastQC Report
Tue 10 May 2022
EGAF00003672438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27345
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA9013.29493508868166No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT8172.987749131468276No Hit
GTACATGGGAGTGGCTGCATTCGGCGATACCGCTGGCCGATTCCACCACG640.23404644359115012No Hit
GTACTATGTTAGCCCCATAATTTTTTTTTTCCTTTTAAAACACTTCCATA460.16822088133113916No Hit
GTCCAGGCACTGCTGCCCAGCCTCCAAGCTCCATCTCCACTCCAGATTTT450.16456390565002743No Hit
TCCATAATCTGGACTCCTCTGTCCAGGCACTGCTGCCCAGCCTCCAAGCT450.16456390565002743No Hit
GTGTTAGGATTAGGTATATATTTTAAAAGGCATGGCTGGGTGCGGTGGCT420.15359297860669227No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG380.13896507588224538No Hit
GTATACGGGCTCGAATCGCCACCGTGGGCCCTGTTCCTGCCGTGCCCCTG380.13896507588224538No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT370.13530810020113365No Hit
GTACATGGGTGTTTGTATATGCTAAGATCGCCATCATCAAAGGTTATGAG350.12799414883891022No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG340.1243371731577985No Hit
AACATATACAGCATTCATTCGCTGAGTACCTGCCAAGAGCGAGGCTAGGT310.11336624611446335No Hit
GTACATGGGTCGACGCCGATCCGTACCTGGTCCACCACGAAGTGGACGAT310.11336624611446335No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT300.10970927043335163No Hit
CCTTAATATATTCGCTGGTTTAACTGACGAAGCTCAACATGCTGAAATCA290.1060522947522399No Hit
GTACATGGGACTCTCCCTACCCATTCCTGCCAGCTCTGCCTCCTTTTCAA280.10239531907112819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)