FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length100
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTCTTCGGTCGACCCGGGAGGGGCCGGCGTCGTGTCGATCGCGCGGC37.894736842105263No Hit
CACCGCCGACCACGCCCTCGACGTGGTCGAGCAGCTGCTGAAGACCTACT25.263157894736842No Hit
CAATCCCGCAGGCCCCGGTTGCCACGGTATACATTAGGCATGGATCATTT25.263157894736842No Hit
GCTAAAGAGCCCGCGTCACAATACTGGCGACCCGGGCAGGGCGACTGGCT25.263157894736842No Hit
GGTCCGTCCACGGTCAACGAGTAGACAGCGCTATGCCCAGGCACCCACGG25.263157894736842No Hit
GGCGGTGAAGTTTTCCTGCAGGATCAGCGGCATCTGGCGCGCGCGCTCGA25.263157894736842No Hit
CCGTGGGGCGCAGTCGCGATCACAGCAGGGATGTTCCTGCCGGCCTTCGC25.263157894736842No Hit
GCGGAGAGATGGCGAAACCACGGCTGGAGCGCTGCACCCATCAACGAGTA12.631578947368421No Hit
GGGAAAAGGGAAGAAAGGACAGAATCAAAAGAAGCTTTGGGCATATCCCC12.631578947368421No Hit
GACGTGGCTGCACGACCTCGCCTCCAAGCAGGGCTATGCCATCGGCCAGG12.631578947368421No Hit
CACTGCCACACCTGGGAGCGGGAGATTTCCGCCGTGGCGGCATCTTCCAT12.631578947368421No Hit
CCTCGCCGCGCTCCTCTTCGACAAGGACGGCACGCTCGTCGATTTCGACC12.631578947368421No Hit
GCGTGGGGTGGCTCGCCTGGGATGGCATCGGGATGACCCGAGGCTCCGAG12.631578947368421No Hit
AGACAGGTGTTCGTGCGGTGCGTCGCCGGTTCGCCGATCCCCGGTCGAGT12.631578947368421No Hit
ATCATCGCCTACGTCTTCAACTTCCTGTTCTCGAACTCCCTGCCGGCCGC12.631578947368421No Hit
GGAACTTCATGAGCTGTTTTTACTGGAGCGCAGTGTTGATCACCTTCCTG12.631578947368421No Hit
CACAACACCAGACCAGGCAGGTAGTTGGCAGCCTTCGGGTATTCCCGAAC12.631578947368421No Hit
CAACGCCGATCCCGCCGCGGATATGGCCGAAGCCAGCTTCGACATCCTCG12.631578947368421No Hit
TTACTGAACGCCCTCGTTTCACTCGGACTGAGCTGTGTGACGACAGCGTT12.631578947368421No Hit
GATATGCTCTCGGTCAACCAATCCAGCGATGAGCGTATTAGCCCGCCGTC12.631578947368421No Hit
ACCCGGGCGATGTTGTAATCGGCGCGAAGGAAGATGTCGGCGTTGCCGAA12.631578947368421No Hit
CAACGGATCGGCGCGCGGCTCAAAAAAAACGCCGCGCCCCCACGGCCCGC12.631578947368421No Hit
CCGTGGGGCGCAGTCGCGATCACAGCAGGGATGTTCCTGACGGCCTTCGC12.631578947368421No Hit
GTCAGCACCAGTTCATCGGCCAGCGGCAGCGCCTGCGCATAGAGTTCCCG12.631578947368421No Hit
CAACTACACTGAGGATTTCGGCTGGGAGCAGGATGGTCTACGTGGGCACA12.631578947368421No Hit
GCTACTGCTAATTCCTTCTGCACAGCATAGGCATAAAATTTTTCATGTGC12.631578947368421No Hit
GCCTAACATTTAAGTGCAGAAGAGTGCCGTACCTAGACGAAGCGTAACAG12.631578947368421No Hit
GCCTGAATAGGTGACGTCGTCCCCCAGATTGGCTCCGCGATTCACCCCGG12.631578947368421No Hit
AGGTAGTGTCGCAATGAAACGCCTCGTTGTATCGCTGATCGCTGCTGCCG12.631578947368421No Hit
CTGGGTAACCAGGTCCTGCCAGAACGGCATGCCTTCCTTGCCCTCGAAAG12.631578947368421No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)