FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length100
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGCAATGGCGAGCGCGGGCGCTGGGCTCTCGACGCGCGGCCAGATCG37.894736842105263No Hit
CCGGAGGTCTTCCCGCCCACACTCCGCGAGGTCATGCTGCGGCCGCGCTG37.894736842105263No Hit
TCCAATATAACGGGGACAAGCGACGCTACTACGGTAATTTTGCCGCTTTT25.263157894736842No Hit
GCCGGAGGCTGTCCATGACCCTGACCGAACTCAAATACGTCGTCGCGGTG25.263157894736842No Hit
GCGTTGTGCAGGTCATTGAGAATACGTTGGCAATCTTCCAGGAACGCCGA25.263157894736842No Hit
GGCTCAGGACGACCGAGACCGCGCAGGTCCCGAGCGCTCCGAACAGCAGC25.263157894736842No Hit
AGTCTGAAGAACCTGATGATGGCCTGTTTCCTACACGCGCACGACGGAAA12.631578947368421No Hit
CCGTAGAACTCGCGCTCGTTCTGGGTGAGCTGCACGTTGATGGCCTCGCG12.631578947368421No Hit
ATACCGTCGGCCTCGACGCCGATTCCGCTACCGTGATCGCGGGCGGCGAT12.631578947368421No Hit
ACCAATGACGACGGCGTGCATGCCCCCGGGCTCGAGGTGCTCGAAGCCAT12.631578947368421No Hit
TGGTTGCCACGAGCAGAGGCGAAACCATCCCCGGCGGCAGGCCAGCGAGC12.631578947368421No Hit
ATCTTGATTTTATCTCGATCTGAGATTGAAAAAGAGGTAGAAAAAAAACT12.631578947368421No Hit
CGTCGCGTCGGTGAAGGCGGCATTCATCTCGTCCAGCAGCACAGCGTCGT12.631578947368421No Hit
ACTAAGGTCCTTATGGCTTGTGTGCGTGCTGGCGTCGGTCGGGAGGACGC12.631578947368421No Hit
GCGTCAGATGTGTATAAGAGACAGGTTATGCGGTAGGTAGGTCACGAGTA12.631578947368421No Hit
AGCTCGGGCGGCGAAGGCAATGCCAACATCGCCGTGCGCGGCCTGCCCGT12.631578947368421No Hit
GAAGAACGCCATCGCCATGGCCGGCATCATCAACGACAAGAAGCGCGACG12.631578947368421No Hit
GGACGATCCCCATCGGAAGGAAACTCGCAAGGCAGTACGCGAGTCGTCTT12.631578947368421No Hit
GACGTTGTAGCTGACGATGACGATGGAGATGGTCGGTGACACGTAAAGCC12.631578947368421No Hit
GGTACTTCACCCATTTCCAGGCTTCGTCCTTGTGCTTGGAGCCCGACCAG12.631578947368421No Hit
TCGGACGGCAACGAACACGGAGTCGAGCGTGACAGACCACGAAACGAACA12.631578947368421No Hit
TATCATTTCTGCTCACATGCTGCTGGCAGAACTCAGTGTCGTGGCCACAA12.631578947368421No Hit
CGCCTAAATCGCTCTCGAAATCGGTTTCGGCGAGCGAATTCCGCCACTCA12.631578947368421No Hit
GCGTCCGATGTGTATAAGAGACAGGTTCTGCGGTAGGTAGGTCACGAGTA12.631578947368421No Hit
CCATCCCCCGGCACCACGCCGGTGAGCGATTTCAGCTCCAGGGTGGAGCC12.631578947368421No Hit
AGCGAGGTGCCCGCGGCCGGCAGGGAGTTCGAGAACAGGAAGTTGAAGAC12.631578947368421No Hit
GGACTCCATCGGCCGCCCGCTTCCCGGGCGACGCAACATCGTTGTGACCC12.631578947368421No Hit
GCAGGAGCCAAACAGATTATCGTTCAGCTTGTCATTGCCGGTGGTCTCTG12.631578947368421No Hit
GTCAATTGTGACGGAGGCTCTCGGAGTGAAGCTAGCAGGAAGGTGATCAA12.631578947368421No Hit
GGGGCATAGCGCCTGTGAGTACAGGGCTACTAAATGAACGCCTTGGTGAA12.631578947368421No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)