FastQCFastQC Report
Wed 8 May 2024
EGAF00003672520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156353
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA1800.11512411018656502No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA1640.10489085594775924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)