FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCGGACACTCCGCGTCCTCGCGCGCTCCTGCGGAGGAACCCGACGAC24.651162790697675No Hit
CCTCACCTAGAGGAGCATGCAGGGATCCCCTACGAAATCGCCCTTGCGAT24.651162790697675No Hit
GTATTGCCTACACCCGCGAGCAGATCACCGATGTCACCGTCGCCACGGAC24.651162790697675No Hit
ATTGAGAACTTTGCATCATACACCAGAATATCGCGCACAATAATAAGATG24.651162790697675No Hit
CATTGAGAAGGTGGATGGGAAACCAGTGGCCTCCGTTCTCGACGTCGGCA24.651162790697675No Hit
CTCCTGATTACCGAGTCGTAGTCAGACGCGTTGCCATTACGCCAGGCGGC24.651162790697675No Hit
CCCCCTCTCCTCTCTCCATCTCGCTTCACATGGGCAGTCACTAACGTTGG12.3255813953488373No Hit
GCTAGGTTTGCATAGCCTGACCTGCACTAAGGCAGGCCGAACTTCCTTGC12.3255813953488373No Hit
CCGCTCACTGTGCGTAGATAATGACGTTTGACCAGATTATCCAGCTGTTC12.3255813953488373No Hit
GCAGCGACATCTGGGCCAGCGCCATGTTCGGCTCCAGCGTCCGGTCCCCG12.3255813953488373No Hit
GCCGAGCTCCTGCCGAACGCGACGTTCTACGTGCACGAGCTCGGCTACCC12.3255813953488373No Hit
ACACACACCAAGACGTCTCCGTCTAGGGACTTCGGCACATCCTCGTGGTG12.3255813953488373No Hit
TTCCTGGCGGCGATCCCGAACATTCTGGCCCGGTTTCCTGTTGCTGTCTC12.3255813953488373No Hit
CGACTCGTCGTCGACCGGGCGGGCGTCGGCGCGCCGGAGTCCGCCTCGGT12.3255813953488373No Hit
CAGTGAATCCAGAGACGAGCGCAGCGACCCCGAGGAGTCGGCCTGGGTGG12.3255813953488373No Hit
GCTCCTGATCGAGCGCCGTGCCCGCCTCGGCGGCGGCCGGGTGTTCTGGT12.3255813953488373No Hit
GGCGTGTGCGGCACGGCGCTGCGCTGGTGCCATTGCGACCTGTCTCTTAT12.3255813953488373No Hit
GACATCCGTCAGCCGGGTGGCGTACGGCTCGTCGAACCGGTCCTCCCTGC12.3255813953488373No Hit
CGTGGGTAGCTACCCCAAACCCAAATGGCTCCACCGGGTGCGCGATCTGT12.3255813953488373No Hit
TCGCTGCTCGTGGTGGAGGACACGGACCTGCTGCTCAGCGCAGGCCCGGA12.3255813953488373No Hit
ATACTACACGGGTTGATGTTGGGTTCGTTAACGTTCACGATCAGGAAATA12.3255813953488373No Hit
GCGTTCGGCTACGGCGCGGACACCTATCAGGCCTCGATCGAGATGGCCGA12.3255813953488373No Hit
CTCTCATGCCGCACCGTCGCCCGGTGGTTCAGCGATCTGGCCGCGGTTAT12.3255813953488373No Hit
GGGTGCCACCTCGTCCAGCAGGATGCGAGAGCCGCTCTCGGTCACCGCCT12.3255813953488373No Hit
CCCCAGGGTTGAGCGTGAGGAGGTGAGTGCCCCCGAGGGCACCGTCCGGG12.3255813953488373No Hit
CCTCATGGTCTTCGGCGAGGGGCCTGGTCAGCTCGGTCAGACTTAAAAAT12.3255813953488373No Hit
GCCCATCAGCATCAGAGGCTTGTTGGGCTTGTCCTTGAAATCCTTCTCCC12.3255813953488373No Hit
GATGTGCTCAGGCGTGTCGGGATAGAGTTGGTCGACCTGCCGGGGGAGTC12.3255813953488373No Hit
CCTGTCATTTCCCGCTGAACATGGAGAAAGAGTGAGATGATCGAAACGCT12.3255813953488373No Hit
GCCCTCGACTGTGCCGACGCCGGCTGCTCGGTGACGCTGCTGGAGGCCCG12.3255813953488373No Hit
GACAACAACTCTTGTGCCCCGTCGCCGGTTGCAAAAAAGTGGTGAGACAA12.3255813953488373No Hit
CGTGCGGCCGATCCGGCGCATCGTGCGCCAGGCCGAGCACCTGGCCTCCG12.3255813953488373No Hit
CCCTGGTCGACCCGACGATGGACCGCCGCATCGCCGTCACCGGTGCCGAC12.3255813953488373No Hit
GGACAGGTACATGTCGCTGATGAAGATGAGCCGCTTGCCATTGGCCTTGA12.3255813953488373No Hit
GGGGAGAACGATGCCTGCGCCGACCGCCGCCACCTTCGACCGCCTGGTCG12.3255813953488373No Hit
CCTTTGAGTTTCAGCCTTGCGGCCGTACTCCCCAGGCGGAGTGCTTATTG12.3255813953488373No Hit
GCAGCGGACACCAGAATTACCGAGCCCATAGCCAGTATGGCGCCGAAAAA12.3255813953488373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)