FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACCGTCTGGGGAAATGCCGCCAGTTCCCGCGATCCGCAGTGAACCGA24.651162790697675No Hit
AGGGATCCATTCCAGGATTTTGCTGCCCATTTTGGTGATCCCCAGAATGA24.651162790697675No Hit
GTGAATCCTTCCATGATCGCAACTCGTCCATATTGGCAGCATCTTATTAT24.651162790697675No Hit
GGCTGATGCTCACCTAAAGTTCTTCCCAGAAAATATTCAGCGAGAGTCCA24.651162790697675No Hit
CATCCCCGCCCGGAAGTATCCGGGGTGGATCAGGCAGGGCCTGACCTGGG24.651162790697675No Hit
TCGGTGCAGACCCGCGCCTGAAGCTCCTCGATCGCCTGATGGCGGCGGAA24.651162790697675No Hit
GTCATTGCCAGGAGTCCATTAAGCGGTTATAGCGCTATCGGGGGAACTGG12.3255813953488373No Hit
CTGCGCGGAATCTTTGAGTCTCACGCGCAGAGTCTCCAACAGATGCTGCT12.3255813953488373No Hit
GCCGCGATAGATGGAGGTGGTTATGGAGGATGGAAAAGACAGGAGACTTG12.3255813953488373No Hit
GCGCGTAGGCGGCCGGTTAAGTCCTGTGTGAAAGACCACGGCTCAACCGT12.3255813953488373No Hit
CTGCTTGCCTTTCTGCCAGTGCTGATCTCCCATTGGGTGGGGCGGAAGGC12.3255813953488373No Hit
CTTCTGGGCGGCGCGCACGGTCTCGACGGCGGCCAGGACGTCGTCCCGAG12.3255813953488373No Hit
GAGCTACAGAGGCATGTCACCTCGCGGTGACGTGGAACATTGTGGCACAT12.3255813953488373No Hit
GTGTGGTGCGCCCACTTGGGAGCGCGAGTGCCGCTGCTGGAGGTGCTGTG12.3255813953488373No Hit
CGTGGCGGATGTCGCGCACCACCGTGCGCACGCCGACCTCGACCTGCTGC12.3255813953488373No Hit
GTGCGGGGGCGTGCGCACCGGGATGAGTCTATCCCCCTGGTCCGAAAGCC12.3255813953488373No Hit
CGTAGGCCATCGACCCCTCGAAGGATCCTGACCGTGCACGCCCCGTTGTC12.3255813953488373No Hit
ACTCAGGAGCCCGGAAACTCACCAAGGGCACCGGCGTGTTCTCCAGCCAG12.3255813953488373No Hit
CAACAGGAAACCGGGCCAGAATGTTCGGGATCGCCGCCAGGAACTGTCTC12.3255813953488373No Hit
CCGTGGCGAGCACCTCGCGGCGCACCACCTCACGGATCCAGGCACCGCTG12.3255813953488373No Hit
AGCCCGAGTCGGGCTCCAGGTACGCCAGGTGGTGGTAGGCGTGGCCCGGG12.3255813953488373No Hit
GTCGCAATGGCACCAGCGCAGCGCCGTGCCGCACACGCCCTGTCTCTTAT12.3255813953488373No Hit
GTGTTCAGACGCAATGGAAAATCCAGAATTTGCGAGATACGTTGACGGGG12.3255813953488373No Hit
GCTCGCGGTGATGGCCGACGACGTGGCCGAGACGCTCGACGCCGAGGGCC12.3255813953488373No Hit
GCGTCGATGTCGCACCCAGCCCCGAGCGGGGTGGACATCACCCTTGTCGT12.3255813953488373No Hit
GCGCCAGCGCGCCATAGGCCTTGCCATGGGCGATCTCGGCCCGCATCAGG12.3255813953488373No Hit
GTCCCGTACGGCACCTGGTTCCGCCGCTACCGCGCTCGACAGGCCCCGGA12.3255813953488373No Hit
GCCGTGGCGCGCGGTTTCCATGCGCGTCTGCGCGAACTGCTCAACCCCTC12.3255813953488373No Hit
CGCCACGCCGACGACAACCGCGGCGGTGGAGACGATGCCGTCGTTCGCCC12.3255813953488373No Hit
TTCTTGTCCTCGGCCACCAGCACGCGCGCCAGCTTGCCGACCGGGTCGTC12.3255813953488373No Hit
GGGATGTCGAGCCGGGGCTGCAGCACGGTCTGCCCGGCCACGCCGAGCCG12.3255813953488373No Hit
CTCCATCCTGGGCGTCCCGCAGACCGACTACGACAGCTTCGTCCGCTGGA12.3255813953488373No Hit
GACCTCGCTGCGGCTGCGGGCGGTGGACGAGGGCGCGTTCGGCACCCACC12.3255813953488373No Hit
ATTCTTGGCTGGAACTTTATCGAAGTCGGCATAAAGCTGCAGCCATCCGA12.3255813953488373No Hit
ATCTCGGTTATTCGATTGGGCAAAAATGGCAGGGCAAAGGACTCATGTTT12.3255813953488373No Hit
GACGTTTTGCGGCCTTGCCGCAAAACGAGTCGGCATTAGATAGACTGGAG12.3255813953488373No Hit
ATTGAACTCGTAGCCATCGATCCGGTGGGCGAAGAACTCGACCATTTCAT12.3255813953488373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)